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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035483 through 18771 annotations produced 1 hits



(CG1134):

Annotation Number : CG1134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035483
Gbrowse : chr3L:4021438-4023058 (+) // 99.35 //
Probeset : 1636877_at
Accessions : protein= NP_647847;, nucleotide= NM_139590;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035483.
BDGP gene expression has embryonic in situ data for CG1134: 7 pix of staining in 4 body parts.
BioGrid reports that CG1134 interacts with CG6668 .
VDRC has 3 RNAi stocks for FBgn0035483 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 14 of 4 0.50Down
Head77 ± 64 of 4 0.50Down
Eye83 ± 14 of 4 0.51Down
Thoracicoabdominal ganglion83 ± 44 of 4 0.50Down
Salivary gland108 ± 34 of 4 0.66Down
Crop102 ± 24 of 4 0.60Down
Midgut123 ± 44 of 4 0.80Down
Tubule109 ± 14 of 4 0.70Down
Hindgut111 ± 24 of 4 0.70Down
Heart84 ± 24 of 4 0.52Down
Fat body93 ± 134 of 4 0.57Down
Ovary153 ± 04 of 4 0.90None
Testis837 ± 444 of 4 5.10Up
Male accessory glands79 ± 44 of 4 0.50Down
Virgin spermatheca65 ± 24 of 4 0.40Down
Mated spermatheca86 ± 64 of 4 0.53Down
Adult carcass114 ± 74 of 4 0.70Down
Larval CNS64 ± 44 of 4 0.39Down
Larval Salivary gland123 ± 44 of 4 0.76Down
Larval midgut135 ± 84 of 4 0.83Down
Larval tubule106 ± 104 of 4 0.70Down
Larval hindgut100 ± 84 of 4 0.61Down
Larval fat body153 ± 474 of 4 0.90None
Larval trachea96 ± 24 of 4 0.59Down
Larval carcass123 ± 104 of 4 0.76Down
S2 cells (growing)121 ± 24 of 4 0.75Down
Whole fly163 ± 44 of 4

Looking for FBgn0035483. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime