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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035491 through 18771 annotations produced 1 hits



Dpy-30-like 2 (Dpy-30L2):

Annotation Number : CG11591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035491
Gbrowse : chr3L:4046999-4047673 (-) // 100.0 //
Probeset : 1640895_at
Accessions : protein= NP_647854;, nucleotide= NM_139597;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035491.
BioGrid reports that CG11591 interacts with CG2061 CG3163 CG31729 CG4712 CG6606 CG12775 CG14472 CG2979 CG3320 CG3363 CG3743 CG5870 .
VDRC has 2 RNAi stocks for FBgn0035491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head7 ± 21 of 4 0.00Down
Eye3 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion7 ± 00 of 4 0.00Down
Salivary gland23 ± 52 of 4 0.05Down
Crop13 ± 14 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut9 ± 23 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body11 ± 43 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis2668 ± 1704 of 4 6.10Up
Male accessory glands10 ± 30 of 4 0.00Down
Virgin spermatheca10 ± 14 of 4 0.02Down
Mated spermatheca12 ± 13 of 4 0.03Down
Adult carcass17 ± 62 of 4 0.00Down
Larval CNS5 ± 14 of 4 0.01Down
Larval Salivary gland6 ± 11 of 4 0.02Down
Larval midgut8 ± 21 of 4 0.02Down
Larval tubule4 ± 00 of 4 0.00Down
Larval hindgut8 ± 11 of 4 0.02Down
Larval fat body511 ± 2314 of 4 1.20None
Larval trachea22 ± 332 of 4 0.05Down
Larval carcass6 ± 01 of 4 0.01Down
S2 cells (growing)2 ± 01 of 4 0.01Down
Whole fly438 ± 214 of 4

Looking for FBgn0035491. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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