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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035495 through 18771 annotations produced 1 hits



(CG14989):

Annotation Number : CG14989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035495
Gbrowse : chr3L:4088999-4091677 (+) // 100.0 //
Probeset : 1629907_at
Accessions : protein= NP_647855;, nucleotide= NM_139598;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035495.
BioGrid reports that CG14989 interacts with CG5395 CG9247 .
VDRC has 2 RNAi stocks for FBgn0035495 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1916 ± 314 of 417.40Up
Head549 ± 544 of 4 5.00Up
Eye45 ± 104 of 4 0.42Down
Thoracicoabdominal ganglion2619 ± 1434 of 423.80Up
Salivary gland8 ± 10 of 4 0.07Down
Crop6 ± 01 of 4 0.10Down
Midgut123 ± 34 of 4 1.10Up
Tubule4 ± 10 of 4 0.00Down
Hindgut5 ± 01 of 4 0.00Down
Heart3 ± 00 of 4 0.03Down
Fat body10 ± 32 of 4 0.09Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca12 ± 24 of 4 0.11Down
Mated spermatheca9 ± 23 of 4 0.09Down
Adult carcass29 ± 44 of 4 0.30Down
Larval CNS994 ± 874 of 4 9.05Up
Larval Salivary gland3 ± 21 of 4 0.03Down
Larval midgut243 ± 44 of 4 2.22Up
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.05Down
Larval fat body7 ± 10 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.03Down
Larval carcass4 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly110 ± 34 of 4

Looking for FBgn0035495. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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