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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035498 through 18771 annotations produced 1 hits



Fermitin 1 /// ran (Fit1 /// ran):

Annotation Number : CG14991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035498
Gbrowse : chr3L:4103566-4107121 (+) // 100.0 //
Probeset : 1637149_s_at
Accessions : protein= NP_647858; /// NP_728936;, nucleotide= NM_139601; /// NM_168060;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0035498.
BDGP gene expression has embryonic in situ data for CG14991: 4 pix of staining in 1 body parts.
Homophila reports that CG14991 is a close match (7e-142) to human gene C20orf42;KIND1;URP1 (NP_060141), a gene associated with Kindler syndrome, 173650 (3).
BioGrid reports that CG14991 interacts with CG18854 .
TRiP has 1 RNAi stocks for FBgn0035498 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain342 64 of 4 0.90Down
Head410 194 of 4 1.10None
Eye362 34 of 4 0.93None
Thoracicoabdominal ganglion399 104 of 4 1.00None
Salivary gland1447 354 of 4 3.71Up
Crop1337 324 of 4 3.40Up
Midgut712 34 of 4 1.80Up
Tubule911 1534 of 4 2.30Up
Hindgut832 104 of 4 2.10Up
Heart1799 634 of 4 4.62Up
Fat body694 594 of 4 1.78Up
Ovary520 84 of 4 1.30Up
Testis240 54 of 4 0.60Down
Male accessory glands1061 214 of 4 2.70Up
Virgin spermatheca758 354 of 4 1.95Up
Mated spermatheca882 414 of 4 2.27Up
Adult carcass717 164 of 4 1.80Up
Larval CNS350 214 of 4 0.90None
Larval Salivary gland975 304 of 4 2.50Up
Larval midgut724 324 of 4 1.86Up
Larval tubule581 194 of 4 1.50Up
Larval hindgut655 274 of 4 1.68Up
Larval fat body1345 1364 of 4 3.50Up
Larval trachea614 264 of 4 1.58Up
Larval carcass818 424 of 4 2.10Up
S2 cells (growing)315 44 of 4 0.81Down
Whole fly389 134 of 4

Looking for FBgn0035498. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime