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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035510 through 18771 annotations produced 1 hits



CG15006 (Cpr64Aa):

Annotation Number : CG15006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035510
Gbrowse : chr3L:4207835-4209186 (-) // 100.0 //
Probeset : 1632860_at
Accessions : protein= NP_647872;, nucleotide= NM_139615;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0035510.
BDGP gene expression has embryonic in situ data for CG15006: 8 pix of staining in 1 body parts.
BioGrid reports that CG15006 interacts with CG8390 CG2238 CG4287 CG4994 CG5374 CG6588 .
VDRC has 1 RNAi stocks for FBgn0035510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.80None
Head3 ± 00 of 4 1.10None
Eye3 ± 10 of 4 0.97None
Thoracicoabdominal ganglion3 ± 10 of 4 0.90None
Salivary gland8 ± 30 of 4 2.21None
Crop3 ± 10 of 4 0.90None
Midgut4 ± 10 of 4 1.20None
Tubule2 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 1.20None
Heart1 ± 10 of 4 0.48None
Fat body4 ± 30 of 4 1.19None
Ovary1 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.30None
Male accessory glands12 ± 10 of 4 3.40Up
Virgin spermatheca4 ± 10 of 4 1.09None
Mated spermatheca2 ± 10 of 4 0.61None
Adult carcass18 ± 12 of 4 4.90Up
Larval CNS4 ± 30 of 4 1.29None
Larval Salivary gland3 ± 10 of 4 0.97None
Larval midgut4 ± 10 of 4 1.11None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.39None
Larval fat body0 ± 00 of 4 0.20None
Larval trachea3 ± 30 of 4 1.01None
Larval carcass16 ± 32 of 4 4.42Up
S2 cells (growing)1 ± 00 of 4 0.37None
Whole fly3 ± 10 of 4

Looking for FBgn0035510. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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