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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035512 through 18771 annotations produced 1 hits



CG15008 (Cpr64Ac):

Annotation Number : CG15008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035512
Gbrowse : chr3L:4212244-4212873 (-) // 100.0 //
Probeset : 1625570_at
Accessions : protein= NP_647874;, nucleotide= NM_139617;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035512.
BioGrid reports that CG15008 interacts with CG5161 CG4167 .
VDRC has 1 RNAi stocks for FBgn0035512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.70None
Head20 10 of 4 4.20Up
Eye3 20 of 4 0.77None
Thoracicoabdominal ganglion5 10 of 4 1.10None
Salivary gland6 00 of 4 1.25None
Crop5 10 of 4 1.10None
Midgut6 20 of 4 1.30None
Tubule4 00 of 4 0.90None
Hindgut3 10 of 4 0.70None
Heart4 10 of 4 0.88None
Fat body13 70 of 4 2.68None
Ovary6 00 of 4 1.40None
Testis1 00 of 4 0.30None
Male accessory glands7 20 of 4 1.60None
Virgin spermatheca8 20 of 4 1.61None
Mated spermatheca5 10 of 4 1.12None
Adult carcass8 10 of 4 1.70None
Larval CNS6 41 of 4 1.27None
Larval Salivary gland17 20 of 4 3.48Up
Larval midgut3 00 of 4 0.63None
Larval tubule3 00 of 4 0.70None
Larval hindgut1 00 of 4 0.38None
Larval fat body12 60 of 4 2.40None
Larval trachea4 30 of 4 0.86None
Larval carcass7 20 of 4 1.59None
S2 cells (growing)5 10 of 4 1.14None
Whole fly5 10 of 4

Looking for FBgn0035512. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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