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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035513 through 18771 annotations produced 1 hits

CG1259 (Cpr64Ad):

Annotation Number : CG1259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035513
Gbrowse : chr3L:4215383-4216414 (+) // 99.58 //
Probeset : 1630307_at
Accessions : protein= NP_647875;, nucleotide= NM_139618;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0035513.
BDGP gene expression has embryonic in situ data for CG1259: 12 pix of staining in 4 body parts.
BioGrid reports that CG1259 interacts with Dmel CG34324 CG13030 CG15370 CG15771 CG3056 CG5155 CG7605 CG8965 CG9572 CG13674 CG14039 CG14044 CG14079 CG14369 CG15211 CG17666 CG17826 CG1841 CG1848 CG2174 CG31006 CG31999 CG33213 CG4027 CG4767 CG4785 CG4804 CG4818 CG6378 CG8277 CG8942 CG9893 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 CG9027 Dmel CG40368 .
VDRC has 1 RNAi stocks for FBgn0035513 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 20 of 4 0.30Down
Head10 20 of 4 0.40None
Eye5 00 of 4 0.18Down
Thoracicoabdominal ganglion7 30 of 4 0.30Down
Salivary gland31 100 of 4 1.06None
Crop15 50 of 4 0.50None
Midgut15 20 of 4 0.50None
Tubule10 10 of 4 0.40Down
Hindgut13 50 of 4 0.40None
Heart10 11 of 4 0.37None
Fat body26 111 of 4 0.90None
Ovary4 20 of 4 0.20Down
Testis5 00 of 4 0.20Down
Male accessory glands12 30 of 4 0.40None
Virgin spermatheca12 40 of 4 0.42None
Mated spermatheca17 30 of 4 0.58None
Adult carcass18 20 of 4 0.60None
Larval CNS11 50 of 4 0.41None
Larval Salivary gland19 40 of 4 0.66None
Larval midgut2 00 of 4 0.10Down
Larval tubule12 30 of 4 0.40None
Larval hindgut10 30 of 4 0.36None
Larval fat body6 10 of 4 0.20Down
Larval trachea79 104 of 4 2.72Up
Larval carcass8 10 of 4 0.30None
S2 cells (growing)8 10 of 4 0.30None
Whole fly29 60 of 4

Looking for FBgn0035513. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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