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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035518 through 18771 annotations produced 1 hits



(CG15011):

Annotation Number : CG15011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035518
Gbrowse : chr3L:4255990-4259152 (-) // 100.0 //
Probeset : 1625770_at
Accessions : protein= NP_647879;, nucleotide= NM_139622;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0035518.
BDGP gene expression has embryonic in situ data for CG15011: 15 pix of staining in 2 body parts.
BioGrid reports that CG15011 interacts with CG4570 CG4832 .
TRiP has 1 RNAi stocks for FBgn0035518 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035518 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 24 of 4 0.80Down
Head22 34 of 4 0.50Down
Eye23 24 of 4 0.53Down
Thoracicoabdominal ganglion29 24 of 4 0.70Down
Salivary gland68 44 of 4 1.56Up
Crop31 34 of 4 0.70Down
Midgut50 44 of 4 1.20None
Tubule23 13 of 4 0.50Down
Hindgut27 34 of 4 0.60Down
Heart18 23 of 4 0.41Down
Fat body27 24 of 4 0.64Down
Ovary105 34 of 4 2.40Up
Testis25 24 of 4 0.60Down
Male accessory glands116 114 of 4 2.70Up
Virgin spermatheca41 14 of 4 0.95None
Mated spermatheca42 34 of 4 0.97None
Adult carcass22 24 of 4 0.50Down
Larval CNS53 24 of 4 1.22Up
Larval Salivary gland106 104 of 4 2.43Up
Larval midgut37 33 of 4 0.86None
Larval tubule37 34 of 4 0.80None
Larval hindgut31 24 of 4 0.73Down
Larval fat body29 24 of 4 0.70Down
Larval trachea45 64 of 4 1.03None
Larval carcass38 14 of 4 0.88None
S2 cells (growing)71 24 of 4 1.64Up
Whole fly43 24 of 4

Looking for FBgn0035518. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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