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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035520 through 18771 annotations produced 1 hits



(CG11586):

Annotation Number : CG11586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035520
Gbrowse : chr3L:4261297-4262461 (-) // 100.0 //
Probeset : 1630952_at
Accessions : protein= NP_647881;, nucleotide= NM_139624;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0035520.
BDGP gene expression has embryonic in situ data for CG11586: 4 pix of staining in 1 body parts.
BioGrid reports that CG11586 interacts with CG17489 CG17765 CG18279 CG2746 CG3204 CG6284 CG9423 .
VDRC has 3 RNAi stocks for FBgn0035520 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 24 of 4 1.20Up
Head53 34 of 4 1.00None
Eye215 94 of 4 4.00Up
Thoracicoabdominal ganglion57 24 of 4 1.10None
Salivary gland60 24 of 4 1.11None
Crop55 64 of 4 1.00None
Midgut27 13 of 4 0.50Down
Tubule32 14 of 4 0.60Down
Hindgut36 14 of 4 0.70Down
Heart54 44 of 4 1.02None
Fat body48 44 of 4 0.91None
Ovary93 44 of 4 1.70Up
Testis69 44 of 4 1.30Up
Male accessory glands50 64 of 4 0.90None
Virgin spermatheca54 44 of 4 1.00None
Mated spermatheca62 34 of 4 1.15None
Adult carcass53 54 of 4 1.00None
Larval CNS94 14 of 4 1.74Up
Larval Salivary gland74 74 of 4 1.38None
Larval midgut36 23 of 4 0.68Down
Larval tubule42 14 of 4 0.80Down
Larval hindgut50 14 of 4 0.94None
Larval fat body47 44 of 4 0.90None
Larval trachea65 34 of 4 1.21Up
Larval carcass51 14 of 4 0.95None
S2 cells (growing)55 04 of 4 1.03None
Whole fly54 34 of 4

Looking for FBgn0035520. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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