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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035521 through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase subunit M9.7-a (VhaM9.7-a):

Annotation Number : CG1268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035521
Gbrowse : chr3L:4262793-4263233 (+) // 100.0 //
Probeset : 1635300_at
Accessions : protein= NP_001097499; /// NP_001097500; /// NP_647882;, nucleotide= NM_001104029; /// NM_001104030; /// NM_139625;
Pathway : "0005886 // plasma membrane // inferred from direct assay /// 0016471 // vacuolar proton-transporting V-type ATPase comp
Interpro : V0 domain // inferred from electronic annotation 0008553 // hydrogen-exporting ATPase activity
FlyMine data for FBgn0035521.
BioGrid reports that CG1268 interacts with CG7238 CG8614 .
VDRC has 2 RNAi stocks for FBgn0035521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1221 364 of 419.80Up
Head641 124 of 410.40Up
Eye1124 104 of 418.25Up
Thoracicoabdominal ganglion1347 284 of 421.90Up
Salivary gland15 60 of 4 0.25Down
Crop3 10 of 4 0.10Down
Midgut5 21 of 4 0.10Down
Tubule3 10 of 4 0.10Down
Hindgut12 12 of 4 0.20Down
Heart5 11 of 4 0.09Down
Fat body5 31 of 4 0.09Down
Ovary1 00 of 4 0.00Down
Testis39 24 of 4 0.60Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca4 00 of 4 0.08Down
Mated spermatheca6 02 of 4 0.10Down
Adult carcass31 34 of 4 0.50Down
Larval CNS545 514 of 4 8.84Up
Larval Salivary gland9 11 of 4 0.15Down
Larval midgut14 11 of 4 0.24Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut6 12 of 4 0.11Down
Larval fat body5 21 of 4 0.10Down
Larval trachea22 321 of 4 0.36None
Larval carcass9 11 of 4 0.15Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly61 54 of 4

Looking for FBgn0035521. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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