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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035532 through 18771 annotations produced 1 hits



(CG15014):

Annotation Number : CG15014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035532
Gbrowse : chr3L:4321104-4322230 (-) // 100.0 //
Probeset : 1635972_at
Accessions : protein= NP_647892;, nucleotide= NM_139635;
Interpro : 0003723 // RNA binding // inferred from electronic annotation
FlyMine data for FBgn0035532.
BDGP gene expression has embryonic in situ data for CG15014: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0035532 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035532 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 14 of 4 0.30Down
Head68 ± 44 of 4 0.30Down
Eye73 ± 14 of 4 0.34Down
Thoracicoabdominal ganglion74 ± 44 of 4 0.30Down
Salivary gland93 ± 83 of 4 0.43Down
Crop122 ± 44 of 4 0.60Down
Midgut83 ± 24 of 4 0.40Down
Tubule72 ± 84 of 4 0.30Down
Hindgut89 ± 34 of 4 0.40Down
Heart75 ± 54 of 4 0.35Down
Fat body79 ± 74 of 4 0.37Down
Ovary377 ± 74 of 4 1.70Up
Testis184 ± 54 of 4 0.80Down
Male accessory glands162 ± 34 of 4 0.70Down
Virgin spermatheca112 ± 34 of 4 0.51Down
Mated spermatheca119 ± 24 of 4 0.55Down
Adult carcass67 ± 44 of 4 0.30Down
Larval CNS157 ± 54 of 4 0.72Down
Larval Salivary gland161 ± 64 of 4 0.74Down
Larval midgut42 ± 34 of 4 0.19Down
Larval tubule69 ± 24 of 4 0.30Down
Larval hindgut91 ± 44 of 4 0.42Down
Larval fat body85 ± 84 of 4 0.40Down
Larval trachea136 ± 104 of 4 0.63Down
Larval carcass97 ± 94 of 4 0.45Down
S2 cells (growing)88 ± 24 of 4 0.41Down
Whole fly218 ± 104 of 4

Looking for FBgn0035532. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime