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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035533 through 18771 annotations produced 1 hits



Cip4 (Cip4):

Annotation Number : CG15015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035533
Gbrowse : chr3L:4323533-4364120 (-) // 100.0 //
Probeset : 1631119_at
Accessions : protein= NP_001097501; /// NP_647893;, nucleotide= NM_001104031; /// NM_139636;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred
FlyMine data for FBgn0035533.
BioGrid reports that CG15015 interacts with CG1520 .
TRiP has 1 RNAi stocks for FBgn0035533 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 44 of 4 1.60Up
Head114 164 of 4 0.70Down
Eye166 94 of 4 0.98None
Thoracicoabdominal ganglion237 274 of 4 1.40None
Salivary gland191 74 of 4 1.12None
Crop333 194 of 4 2.00Up
Midgut167 84 of 4 1.00None
Tubule79 94 of 4 0.50Down
Hindgut176 44 of 4 1.00None
Heart71 64 of 4 0.42Down
Fat body52 84 of 4 0.31Down
Ovary465 74 of 4 2.70Up
Testis74 24 of 4 0.40Down
Male accessory glands82 54 of 4 0.50Down
Virgin spermatheca25 14 of 4 0.15Down
Mated spermatheca40 44 of 4 0.24Down
Adult carcass91 34 of 4 0.50Down
Larval CNS217 114 of 4 1.28Up
Larval Salivary gland241 144 of 4 1.42Up
Larval midgut143 44 of 4 0.85None
Larval tubule122 24 of 4 0.70Down
Larval hindgut148 44 of 4 0.87None
Larval fat body71 44 of 4 0.40Down
Larval trachea189 94 of 4 1.11None
Larval carcass149 114 of 4 0.88None
S2 cells (growing)324 64 of 4 1.91Up
Whole fly170 114 of 4

Looking for FBgn0035533. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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