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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035534 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S6 (mRpS6):

Annotation Number : CG15016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035534
Gbrowse : chr3L:4364554-4365243 (+) // 99.36 //
Probeset : 1626497_at
Accessions : protein= NP_523925;, nucleotide= NM_079201;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0035534.
BDGP gene expression has embryonic in situ data for mRpS6: 14 pix of staining in 5 body parts.
BioGrid reports that CG15016 interacts with CG2198 CG6323 CG9007 .
VDRC has 3 RNAi stocks for FBgn0035534 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 104 of 4 1.30Up
Head152 74 of 4 0.90None
Eye128 24 of 4 0.80None
Thoracicoabdominal ganglion239 104 of 4 1.50Up
Salivary gland158 104 of 4 0.99None
Crop95 34 of 4 0.60Down
Midgut214 14 of 4 1.30Up
Tubule77 34 of 4 0.50Down
Hindgut141 44 of 4 0.90None
Heart113 54 of 4 0.71Down
Fat body153 114 of 4 0.96None
Ovary193 34 of 4 1.20None
Testis159 64 of 4 1.00None
Male accessory glands173 94 of 4 1.10None
Virgin spermatheca58 44 of 4 0.36Down
Mated spermatheca54 24 of 4 0.34Down
Adult carcass132 134 of 4 0.80None
Larval CNS199 234 of 4 1.24None
Larval Salivary gland106 24 of 4 0.66Down
Larval midgut122 54 of 4 0.76Down
Larval tubule69 54 of 4 0.40Down
Larval hindgut136 94 of 4 0.85None
Larval fat body68 64 of 4 0.40Down
Larval trachea146 184 of 4 0.91None
Larval carcass103 64 of 4 0.64Down
S2 cells (growing)94 14 of 4 0.59Down
Whole fly160 114 of 4

Looking for FBgn0035534. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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