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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035537 through 18771 annotations produced 1 hits



(CG11342):

Annotation Number : CG11342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035537
Gbrowse : chr3L:4366697-4367414 (-) // 100.0 //
Probeset : 1625841_at
Accessions : protein= NP_647896;, nucleotide= NM_139639;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0035537.
VDRC has 1 RNAi stocks for FBgn0035537 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 23 of 4 0.30Down
Head24 ± 24 of 4 0.40Down
Eye24 ± 14 of 4 0.37Down
Thoracicoabdominal ganglion23 ± 04 of 4 0.40Down
Salivary gland34 ± 34 of 4 0.51Down
Crop47 ± 04 of 4 0.70Down
Midgut29 ± 24 of 4 0.40Down
Tubule24 ± 13 of 4 0.40Down
Hindgut26 ± 14 of 4 0.40Down
Heart22 ± 34 of 4 0.34Down
Fat body31 ± 54 of 4 0.48Down
Ovary134 ± 44 of 4 2.00Up
Testis12 ± 14 of 4 0.20Down
Male accessory glands28 ± 24 of 4 0.40Down
Virgin spermatheca21 ± 14 of 4 0.32Down
Mated spermatheca31 ± 14 of 4 0.47Down
Adult carcass19 ± 13 of 4 0.30Down
Larval CNS32 ± 14 of 4 0.49Down
Larval Salivary gland29 ± 24 of 4 0.45Down
Larval midgut11 ± 12 of 4 0.18Down
Larval tubule21 ± 24 of 4 0.30Down
Larval hindgut23 ± 24 of 4 0.35Down
Larval fat body25 ± 44 of 4 0.40Down
Larval trachea48 ± 64 of 4 0.73Down
Larval carcass20 ± 24 of 4 0.32Down
S2 cells (growing)14 ± 14 of 4 0.22Down
Whole fly66 ± 34 of 4

Looking for FBgn0035537. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime