FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035538 through 18771 annotations produced 1 hits

DopEcR (DopEcR):

Annotation Number : CG18314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035538
Gbrowse : chr3L:4369113-4380376 (-) // 100.0 //
Probeset : 1637636_at
Accessions : protein= NP_001014559; /// NP_001014560; /// NP_647897;, nucleotide= NM_001014559; /// NM_001014560; /// NM_139640;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor acti
FlyMine data for FBgn0035538.
BDGP gene expression has embryonic in situ data for CG18314: 11 pix of staining in 2 body parts.
Homophila reports that CG18314 is a close match (2e-12) to human gene HTR2A (NP_000612), a gene associated with {Alcohol dependence, susceptibility to}, 103780 (3);{Anorexia nervosa, susceptibility to}, 606788 (3);{Major depressive disorder, response to citalopram therapy in}, 608516 (3);{Obsessive-compulsive disorder, susceptibility to}, 164230 (3);{Schizophrenia, susceptibility to}, 181500 (3);{Seasonal affective disorder, susceptibility to}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0035538 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035538 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	401 ± 13	4 of 4	28.10	Up
Head	80 ± 16	4 of 4	5.60	Up
Eye	320 ± 32	4 of 4	22.39	Up
Thoracicoabdominal ganglion	290 ± 42	4 of 4	20.30	Up
Salivary gland	13 ± 2	0 of 4	0.96	None
Crop	7 ± 2	2 of 4	0.50	Down
Midgut	15 ± 1	4 of 4	1.10	None
Tubule	4 ± 0	0 of 4	0.30	Down
Hindgut	4 ± 2	0 of 4	0.30	Down
Heart	3 ± 1	0 of 4	0.28	Down
Fat body	6 ± 5	1 of 4	0.48	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	3 ± 1	1 of 4	0.20	Down
Male accessory glands	8 ± 1	0 of 4	0.60	Down
Virgin spermatheca	10 ± 1	3 of 4	0.72	None
Mated spermatheca	13 ± 5	2 of 4	0.96	None
Adult carcass	10 ± 3	1 of 4	0.70	None
Larval CNS	37 ± 4	4 of 4	2.65	Up
Larval Salivary gland	4 ± 1	0 of 4	0.30	Down
Larval midgut	30 ± 2	4 of 4	2.16	Up
Larval tubule	4 ± 1	0 of 4	0.30	Down
Larval hindgut	2 ± 1	1 of 4	0.15	Down
Larval fat body	6 ± 4	0 of 4	0.40	None
Larval trachea	6 ± 7	1 of 4	0.48	None
Larval carcass	7 ± 0	0 of 4	0.51	Down
S2 cells (growing)	3 ± 1	1 of 4	0.23	Down
Whole fly	14 ± 0	4 of 4

Looking for FBgn0035538. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720