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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035538 through 18771 annotations produced 1 hits



DopEcR (DopEcR):

Annotation Number : CG18314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035538
Gbrowse : chr3L:4369113-4380376 (-) // 100.0 //
Probeset : 1637636_at
Accessions : protein= NP_001014559; /// NP_001014560; /// NP_647897;, nucleotide= NM_001014559; /// NM_001014560; /// NM_139640;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0008227 // G-protein coupled amine receptor acti
FlyMine data for FBgn0035538.
BDGP gene expression has embryonic in situ data for CG18314: 11 pix of staining in 2 body parts.
Homophila reports that CG18314 is a close match (2e-12) to human gene HTR2A (NP_000612), a gene associated with {Alcohol dependence, susceptibility to}, 103780 (3);{Anorexia nervosa, susceptibility to}, 606788 (3);{Major depressive disorder, response to citalopram therapy in}, 608516 (3);{Obsessive-compulsive disorder, susceptibility to}, 164230 (3);{Schizophrenia, susceptibility to}, 181500 (3);{Seasonal affective disorder, susceptibility to}, 608516 (3).
TRiP has 1 RNAi stocks for FBgn0035538 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035538 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain401 134 of 428.10Up
Head80 164 of 4 5.60Up
Eye320 324 of 422.39Up
Thoracicoabdominal ganglion290 424 of 420.30Up
Salivary gland13 20 of 4 0.96None
Crop7 22 of 4 0.50Down
Midgut15 14 of 4 1.10None
Tubule4 00 of 4 0.30Down
Hindgut4 20 of 4 0.30Down
Heart3 10 of 4 0.28Down
Fat body6 51 of 4 0.48None
Ovary1 00 of 4 0.10Down
Testis3 11 of 4 0.20Down
Male accessory glands8 10 of 4 0.60Down
Virgin spermatheca10 13 of 4 0.72None
Mated spermatheca13 52 of 4 0.96None
Adult carcass10 31 of 4 0.70None
Larval CNS37 44 of 4 2.65Up
Larval Salivary gland4 10 of 4 0.30Down
Larval midgut30 24 of 4 2.16Up
Larval tubule4 10 of 4 0.30Down
Larval hindgut2 11 of 4 0.15Down
Larval fat body6 40 of 4 0.40None
Larval trachea6 71 of 4 0.48None
Larval carcass7 00 of 4 0.51Down
S2 cells (growing)3 11 of 4 0.23Down
Whole fly14 04 of 4

Looking for FBgn0035538. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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