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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035543 through 18771 annotations produced 1 hits


Annotation Number : CG15020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035543
Gbrowse : chr3L:4423788-4426364 (+) // 100.0 //
Probeset : 1640853_at
Accessions : protein= NP_647901;, nucleotide= NM_139644;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity
FlyMine data for FBgn0035543.
VDRC has 1 RNAi stocks for FBgn0035543 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.20None
Head1 10 of 4 0.90None
Eye22 34 of 412.81Up
Thoracicoabdominal ganglion2 10 of 4 1.60None
Salivary gland9 20 of 4 5.36None
Crop2 00 of 4 1.70None
Midgut2 10 of 4 1.40None
Tubule2 00 of 4 1.50None
Hindgut2 10 of 4 1.50None
Heart3 00 of 4 2.06None
Fat body5 11 of 4 3.29Up
Ovary2 10 of 4 1.20None
Testis3 11 of 4 2.10None
Male accessory glands3 00 of 4 1.90None
Virgin spermatheca1 00 of 4 0.89None
Mated spermatheca2 10 of 4 1.60None
Adult carcass8 20 of 4 4.70None
Larval CNS1 10 of 4 0.91None
Larval Salivary gland2 10 of 4 1.43None
Larval midgut3 10 of 4 2.07None
Larval tubule4 00 of 4 2.60Up
Larval hindgut1 00 of 4 0.96None
Larval fat body4 10 of 4 2.50None
Larval trachea1 10 of 4 0.76None
Larval carcass2 00 of 4 1.26None
S2 cells (growing)15 14 of 4 8.83Up
Whole fly1 00 of 4

Looking for FBgn0035543. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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