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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035546 through 18771 annotations produced 1 hits



(CG11345):

Annotation Number : CG11345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035546
Gbrowse : chr3L:4457319-4458136 (-) // 100.0 //
Probeset : 1632428_at
Accessions : protein= NP_647904;, nucleotide= NM_139647;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0045735 // nutrient reservoir activity // inferred
FlyMine data for FBgn0035546.
BioGrid reports that CG11345 interacts with CG15015 CG2972 CG3052 CG4887 .
VDRC has 1 RNAi stocks for FBgn0035546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 1.20None
Head4 ± 00 of 4 0.70None
Eye4 ± 10 of 4 0.76None
Thoracicoabdominal ganglion8 ± 20 of 4 1.30None
Salivary gland6 ± 00 of 4 0.98None
Crop9 ± 20 of 4 1.60None
Midgut5 ± 00 of 4 0.90None
Tubule3 ± 00 of 4 0.50Down
Hindgut59 ± 40 of 4 9.50Up
Heart7 ± 20 of 4 1.13None
Fat body32 ± 160 of 4 5.21Up
Ovary7 ± 10 of 4 1.20None
Testis4 ± 10 of 4 0.70None
Male accessory glands39 ± 20 of 4 6.30Up
Virgin spermatheca4 ± 00 of 4 0.69None
Mated spermatheca4 ± 00 of 4 0.69None
Adult carcass17 ± 30 of 4 2.70Up
Larval CNS9 ± 30 of 4 1.57None
Larval Salivary gland6 ± 00 of 4 1.03None
Larval midgut4 ± 00 of 4 0.78None
Larval tubule4 ± 00 of 4 0.70None
Larval hindgut107 ± 92 of 417.33Up
Larval fat body5 ± 00 of 4 0.90None
Larval trachea24 ± 280 of 4 4.00None
Larval carcass202 ± 74 of 432.58Up
S2 cells (growing)23 ± 40 of 4 3.85Up
Whole fly6 ± 20 of 4

Looking for FBgn0035546. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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