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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035547 through 18771 annotations produced 1 hits


Annotation Number : CG15022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035547
Gbrowse : chr3L:4459191-4460313 (-) // 100.0 //
Probeset : 1634956_at
Accessions : protein= NP_647905;, nucleotide= NM_139648;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035547.
BDGP gene expression has embryonic in situ data for CG15022: 23 pix of staining in 2 body parts.
BioGrid reports that CG15022 interacts with CG6049 CG2258 CG31175 CG33115 CG33193 CG3727 CG4755 CG4896 .
TRiP has 1 RNAi stocks for FBgn0035547 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035547 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 20 of 4 0.80None
Head17 20 of 4 0.80None
Eye6 12 of 4 0.30Down
Thoracicoabdominal ganglion19 30 of 4 0.90None
Salivary gland48 40 of 4 2.28Up
Crop27 31 of 4 1.30None
Midgut18 20 of 4 0.90None
Tubule22 20 of 4 1.00None
Hindgut24 21 of 4 1.10None
Heart8 11 of 4 0.42Down
Fat body35 80 of 4 1.69Up
Ovary17 20 of 4 0.80None
Testis10 00 of 4 0.50None
Male accessory glands33 41 of 4 1.60None
Virgin spermatheca38 50 of 4 1.82None
Mated spermatheca42 20 of 4 1.98Up
Adult carcass23 30 of 4 1.10None
Larval CNS34 41 of 4 1.65Up
Larval Salivary gland44 61 of 4 2.09Up
Larval midgut5 20 of 4 0.25Down
Larval tubule21 20 of 4 1.00None
Larval hindgut24 30 of 4 1.17None
Larval fat body20 60 of 4 0.90None
Larval trachea20 74 of 4 0.99None
Larval carcass33 50 of 4 1.57None
S2 cells (growing)19 20 of 4 0.93None
Whole fly21 32 of 4

Looking for FBgn0035547. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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