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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035553 through 18771 annotations produced 2 hits



(CG13722):

Annotation Number : CG13722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035553
Gbrowse : chr3L:4485408-4488013 (-) // 100.0 //
Probeset : 1625282_at
Accessions : protein= NP_647911;, nucleotide= NM_139654;
FlyMine data for FBgn0035553.
VDRC has 3 RNAi stocks for FBgn0035553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 10 of 4 0.70None
Head21 ± 11 of 4 1.20None
Eye10 ± 12 of 4 0.62None
Thoracicoabdominal ganglion14 ± 10 of 4 0.80None
Salivary gland46 ± 50 of 4 2.68Up
Crop19 ± 00 of 4 1.10None
Midgut39 ± 10 of 4 2.20Up
Tubule16 ± 10 of 4 1.00None
Hindgut22 ± 20 of 4 1.30None
Heart6 ± 11 of 4 0.38Down
Fat body27 ± 60 of 4 1.57None
Ovary9 ± 00 of 4 0.50None
Testis11 ± 10 of 4 0.70None
Male accessory glands27 ± 21 of 4 1.60Up
Virgin spermatheca22 ± 20 of 4 1.29None
Mated spermatheca29 ± 30 of 4 1.66Up
Adult carcass31 ± 60 of 4 1.80None
Larval CNS12 ± 30 of 4 0.70None
Larval Salivary gland11 ± 30 of 4 0.64None
Larval midgut24 ± 50 of 4 1.38None
Larval tubule23 ± 20 of 4 1.40None
Larval hindgut40 ± 123 of 4 2.32None
Larval fat body20 ± 20 of 4 1.20None
Larval trachea42 ± 104 of 4 2.46Up
Larval carcass427 ± 1474 of 424.47None
S2 cells (growing)20 ± 10 of 4 1.16None
Whole fly17 ± 21 of 4



(CG13722):

Annotation Number : CG13722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035553
Gbrowse : chr3L:4485408-4488013 (-) // 100.0 //
Probeset : 1625261_x_at
Accessions : protein= NP_647911;, nucleotide= NM_139654;
FlyMine data for FBgn0035553.
VDRC has 3 RNAi stocks for FBgn0035553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 1.00None
Head13 ± 04 of 4 1.50Up
Eye5 ± 11 of 4 0.63None
Thoracicoabdominal ganglion9 ± 21 of 4 1.10None
Salivary gland17 ± 50 of 4 1.96None
Crop13 ± 22 of 4 1.50None
Midgut13 ± 30 of 4 1.50None
Tubule11 ± 01 of 4 1.20Up
Hindgut17 ± 01 of 4 1.90Up
Heart7 ± 02 of 4 0.82None
Fat body20 ± 34 of 4 2.22Up
Ovary8 ± 14 of 4 0.90None
Testis6 ± 20 of 4 0.70None
Male accessory glands14 ± 31 of 4 1.60None
Virgin spermatheca8 ± 10 of 4 0.96None
Mated spermatheca15 ± 53 of 4 1.75None
Adult carcass26 ± 30 of 4 2.90Up
Larval CNS6 ± 41 of 4 0.67None
Larval Salivary gland10 ± 20 of 4 1.17None
Larval midgut15 ± 13 of 4 1.67Up
Larval tubule11 ± 10 of 4 1.20None
Larval hindgut28 ± 103 of 4 3.10None
Larval fat body21 ± 43 of 4 2.40None
Larval trachea19 ± 34 of 4 2.15Up
Larval carcass290 ± 1034 of 431.98None
S2 cells (growing)9 ± 11 of 4 1.03None
Whole fly9 ± 01 of 4

Looking for FBgn0035553. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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