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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035558 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:4542128-4553458 (+) // 100.0 //):

Annotation Number : CG11357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1632063_s_at
Accessions : protein= EC:2.4.-.-, nucleotide=
Interpro : 0006486 // protein glycosylation // inferred from electronic annotation
Homophila reports that CG11357 is a close match (2e-24) to human gene B3GALT3;GLCT3;P (NP_149359), a gene associated with [Blood group, P system], 111400 (3);{Urinary tract infection, susceptibility to} (1).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain471 ± 84 of 4 2.10Up
Head246 ± 204 of 4 1.10None
Eye95 ± 44 of 4 0.42Down
Thoracicoabdominal ganglion381 ± 64 of 4 1.70Up
Salivary gland63 ± 84 of 4 0.28Down
Crop88 ± 34 of 4 0.40Down
Midgut150 ± 44 of 4 0.70Down
Tubule188 ± 94 of 4 0.80Down
Hindgut176 ± 34 of 4 0.80Down
Heart261 ± 254 of 4 1.14None
Fat body274 ± 304 of 4 1.19None
Ovary451 ± 94 of 4 2.00Up
Testis123 ± 54 of 4 0.50Down
Male accessory glands25 ± 24 of 4 0.10Down
Virgin spermatheca323 ± 134 of 4 1.41Up
Mated spermatheca396 ± 74 of 4 1.73Up
Adult carcass115 ± 74 of 4 0.50Down
Larval CNS536 ± 734 of 4 2.34Up
Larval Salivary gland212 ± 84 of 4 0.92None
Larval midgut189 ± 134 of 4 0.82None
Larval tubule656 ± 394 of 4 2.90Up
Larval hindgut333 ± 254 of 4 1.45Up
Larval fat body475 ± 284 of 4 2.10Up
Larval trachea151 ± 234 of 4 0.66Down
Larval carcass273 ± 364 of 4 1.19None
S2 cells (growing)1269 ± 514 of 4 5.52Up
Whole fly229 ± 104 of 4

Looking for FBgn0035558. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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