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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035563 through 18771 annotations produced 1 hits



(CG13716):

Annotation Number : CG13716
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035563
Gbrowse : chr3L:4634435-4634789 (-) // 100.0 //
Probeset : 1636519_at
Accessions : protein= NP_647920;, nucleotide= NM_139663;
FlyMine data for FBgn0035563.
VDRC has 2 RNAi stocks for FBgn0035563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 2.00Up
Head2 ± 00 of 4 0.60None
Eye3 ± 01 of 4 0.74None
Thoracicoabdominal ganglion15 ± 14 of 4 3.20Up
Salivary gland28 ± 64 of 4 5.97Up
Crop3 ± 11 of 4 0.70None
Midgut11 ± 02 of 4 2.30Up
Tubule10 ± 02 of 4 2.20Up
Hindgut73 ± 44 of 415.60Up
Heart3 ± 02 of 4 0.68None
Fat body11 ± 63 of 4 2.33None
Ovary1 ± 00 of 4 0.40Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands10 ± 23 of 4 2.30None
Virgin spermatheca10 ± 13 of 4 2.14Up
Mated spermatheca10 ± 14 of 4 2.18Up
Adult carcass7 ± 10 of 4 1.50None
Larval CNS12 ± 24 of 4 2.69Up
Larval Salivary gland6 ± 01 of 4 1.38None
Larval midgut4 ± 11 of 4 0.84None
Larval tubule12 ± 14 of 4 2.50Up
Larval hindgut15 ± 14 of 4 3.20Up
Larval fat body8 ± 11 of 4 1.70None
Larval trachea1 ± 10 of 4 0.38Down
Larval carcass6 ± 21 of 4 1.46None
S2 cells (growing)2 ± 00 of 4 0.59None
Whole fly4 ± 02 of 4

Looking for FBgn0035563. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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