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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035570 through 18771 annotations produced 1 hits



(CG13712):

Annotation Number : CG13712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035570
Gbrowse : chr3L:4709502-4709856 (-) // 100.0 //
Probeset : 1636642_at
Accessions : protein= NP_647926;, nucleotide= NM_139669;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035570.
BioGrid reports that CG13712 interacts with CG9423 .
VDRC has 1 RNAi stocks for FBgn0035570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.00None
Head0 ± 00 of 4 1.00None
Eye0 ± 00 of 4 0.90None
Thoracicoabdominal ganglion1 ± 00 of 4 1.90None
Salivary gland2 ± 10 of 4 5.43None
Crop0 ± 00 of 4 1.40None
Midgut2 ± 00 of 4 3.80None
Tubule0 ± 00 of 4 1.30Up
Hindgut0 ± 00 of 4 1.30None
Heart0 ± 00 of 4 0.52Down
Fat body0 ± 00 of 4 1.67Up
Ovary0 ± 00 of 4 0.60None
Testis1 ± 00 of 4 2.00None
Male accessory glands1 ± 00 of 4 2.40Up
Virgin spermatheca0 ± 00 of 4 0.95None
Mated spermatheca0 ± 00 of 4 1.52None
Adult carcass1 ± 00 of 4 2.90None
Larval CNS0 ± 00 of 4 1.48None
Larval Salivary gland1 ± 00 of 4 3.05None
Larval midgut0 ± 00 of 4 1.52None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut0 ± 00 of 4 1.05None
Larval fat body0 ± 00 of 4 1.60None
Larval trachea0 ± 00 of 4 1.00None
Larval carcass0 ± 00 of 4 1.48None
S2 cells (growing)0 ± 00 of 4 0.81None
Whole fly0 ± 00 of 4

Looking for FBgn0035570. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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