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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035572 through 18771 annotations produced 1 hits



(CG13711):

Annotation Number : CG13711
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035572
Gbrowse : chr3L:4758028-4758412 (+) // 100.0 //
Probeset : 1639225_at
Accessions : protein= NP_647928;, nucleotide= NM_139671;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035572.
BioGrid reports that CG13711 interacts with CG6819 .
VDRC has 2 RNAi stocks for FBgn0035572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.30None
Head3 11 of 4 2.10None
Eye7 03 of 4 4.37Up
Thoracicoabdominal ganglion3 00 of 4 1.60None
Salivary gland10 20 of 4 5.93Up
Crop3 10 of 4 2.10None
Midgut3 10 of 4 1.60None
Tubule5 10 of 4 2.80Up
Hindgut5 10 of 4 2.90None
Heart2 00 of 4 1.18None
Fat body4 30 of 4 2.52None
Ovary1 00 of 4 0.90None
Testis1 00 of 4 0.80None
Male accessory glands10 30 of 4 5.90None
Virgin spermatheca6 11 of 4 3.59Up
Mated spermatheca11 22 of 4 6.32Up
Adult carcass6 10 of 4 3.60Up
Larval CNS2 20 of 4 1.55None
Larval Salivary gland3 10 of 4 1.90None
Larval midgut2 10 of 4 1.44None
Larval tubule3 10 of 4 1.70None
Larval hindgut2 10 of 4 1.34None
Larval fat body5 10 of 4 3.00None
Larval trachea7 21 of 4 3.89Up
Larval carcass5 10 of 4 3.12None
S2 cells (growing)1 00 of 4 0.97None
Whole fly1 00 of 4

Looking for FBgn0035572. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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