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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035575 through 18771 annotations produced 1 hits


Annotation Number : CG7509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035575
Gbrowse : chr3L:4803076-4805274 (-) // 100.0 //
Probeset : 1634776_at
Accessions : protein= NP_647931;, nucleotide= NM_139674;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035575.
Homophila reports that CG7509 is a close match (5e-13) to human gene (NP_003256), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0035575 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 74 of 4101.50Up
Head95 74 of 437.00Up
Eye73 24 of 428.39Up
Thoracicoabdominal ganglion96 74 of 437.50Up
Salivary gland4 30 of 4 1.83None
Crop0 00 of 4 0.30None
Midgut1 00 of 4 0.60None
Tubule3 10 of 4 1.50None
Hindgut1 00 of 4 0.40None
Heart1 00 of 4 0.65None
Fat body0 00 of 4 0.29None
Ovary0 00 of 4 0.10None
Testis4 10 of 4 1.80None
Male accessory glands3 10 of 4 1.30None
Virgin spermatheca3 10 of 4 1.37None
Mated spermatheca1 10 of 4 0.57None
Adult carcass0 00 of 4 0.30None
Larval CNS0 00 of 4 0.21None
Larval Salivary gland3 30 of 4 1.52None
Larval midgut3 10 of 4 1.46None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.38None
Larval fat body1 00 of 4 0.70None
Larval trachea4 50 of 4 1.62None
Larval carcass2 00 of 4 0.82None
S2 cells (growing)0 00 of 4 0.38None
Whole fly2 10 of 4

Looking for FBgn0035575. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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