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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035578 through 18771 annotations produced 1 hits



(CG13707):

Annotation Number : CG13707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035578
Gbrowse : chr3L:4838078-4838742 (-) // 100.0 //
Probeset : 1625428_at
Accessions : protein= NP_647934;, nucleotide= NM_139677;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035578.
BioGrid reports that CG13707 interacts with CG5474 CG9539 .
VDRC has 1 RNAi stocks for FBgn0035578 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain243 ± 74 of 411.70Up
Head108 ± 84 of 4 5.20Up
Eye129 ± 64 of 4 6.21Up
Thoracicoabdominal ganglion277 ± 64 of 413.30Up
Salivary gland13 ± 30 of 4 0.63None
Crop11 ± 13 of 4 0.60Down
Midgut77 ± 24 of 4 3.70Up
Tubule97 ± 154 of 4 4.70Up
Hindgut96 ± 74 of 4 4.60Up
Heart84 ± 34 of 4 4.05Up
Fat body24 ± 40 of 4 1.20None
Ovary3 ± 10 of 4 0.10Down
Testis4 ± 10 of 4 0.20Down
Male accessory glands10 ± 00 of 4 0.50Down
Virgin spermatheca33 ± 10 of 4 1.62Up
Mated spermatheca13 ± 30 of 4 0.66None
Adult carcass30 ± 10 of 4 1.50Up
Larval CNS103 ± 84 of 4 4.99Up
Larval Salivary gland1 ± 00 of 4 0.09Down
Larval midgut52 ± 94 of 4 2.52Up
Larval tubule286 ± 124 of 413.80Up
Larval hindgut60 ± 24 of 4 2.93Up
Larval fat body34 ± 43 of 4 1.70Up
Larval trachea12 ± 21 of 4 0.62Down
Larval carcass12 ± 10 of 4 0.58Down
S2 cells (growing)14 ± 23 of 4 0.68None
Whole fly20 ± 13 of 4

Looking for FBgn0035578. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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