FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035581 through 18771 annotations produced 5 hits

(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4886100-4889704 (+) // 100.0 //
Probeset : 1623412_a_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.70	None
Head	7 ± 2	0 of 4	1.10	None
Eye	5 ± 1	0 of 4	0.79	None
Thoracicoabdominal ganglion	7 ± 2	0 of 4	1.00	None
Salivary gland	4 ± 0	0 of 4	0.58	None
Crop	6 ± 1	0 of 4	0.80	None
Midgut	5 ± 2	1 of 4	0.80	None
Tubule	7 ± 0	0 of 4	1.00	None
Hindgut	3 ± 1	0 of 4	0.50	None
Heart	4 ± 0	0 of 4	0.65	None
Fat body	7 ± 2	0 of 4	1.03	None
Ovary	6 ± 1	1 of 4	0.90	None
Testis	16 ± 1	4 of 4	2.20	Up
Male accessory glands	7 ± 1	0 of 4	1.00	None
Virgin spermatheca	5 ± 1	0 of 4	0.75	None
Mated spermatheca	5 ± 2	0 of 4	0.72	None
Adult carcass	11 ± 4	0 of 4	1.50	None
Larval CNS	5 ± 1	2 of 4	0.79	None
Larval Salivary gland	4 ± 0	0 of 4	0.55	Down
Larval midgut	7 ± 3	0 of 4	1.02	None
Larval tubule	7 ± 2	1 of 4	1.00	None
Larval hindgut	4 ± 1	0 of 4	0.56	None
Larval fat body	17 ± 1	1 of 4	2.30	Up
Larval trachea	5 ± 1	0 of 4	0.68	None
Larval carcass	5 ± 1	0 of 4	0.71	None
S2 cells (growing)	6 ± 0	0 of 4	0.84	None
Whole fly	7 ± 1	0 of 4

(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4861459-4895291 (+) // 100.0 //
Probeset : 1628360_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	1 of 4	0.10	Down
Head	2 ± 1	0 of 4	0.10	Down
Eye	0 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.10	Down
Salivary gland	8 ± 2	0 of 4	0.43	Down
Crop	2 ± 1	0 of 4	0.10	Down
Midgut	4 ± 1	0 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 1	0 of 4	0.10	Down
Heart	0 ± 0	0 of 4	0.04	Down
Fat body	3 ± 3	0 of 4	0.16	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	391 ± 15	4 of 4	20.60	Up
Male accessory glands	6 ± 1	0 of 4	0.30	Down
Virgin spermatheca	5 ± 1	1 of 4	0.28	Down
Mated spermatheca	3 ± 1	0 of 4	0.17	Down
Adult carcass	6 ± 2	0 of 4	0.30	Down
Larval CNS	3 ± 1	0 of 4	0.16	Down
Larval Salivary gland	4 ± 1	0 of 4	0.22	Down
Larval midgut	2 ± 1	1 of 4	0.15	Down
Larval tubule	4 ± 0	1 of 4	0.20	Down
Larval hindgut	2 ± 0	0 of 4	0.14	Down
Larval fat body	33 ± 18	3 of 4	1.80	None
Larval trachea	1 ± 1	0 of 4	0.08	Down
Larval carcass	3 ± 1	1 of 4	0.16	Down
S2 cells (growing)	3 ± 1	1 of 4	0.16	Down
Whole fly	19 ± 3	4 of 4

(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4885215-4885827 (+) // 100.0 //
Probeset : 1637232_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 1	1 of 4	1.00	None
Head	3 ± 1	0 of 4	2.00	None
Eye	0 ± 0	0 of 4	0.57	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.70	None
Salivary gland	2 ± 1	0 of 4	1.54	None
Crop	2 ± 0	0 of 4	1.40	None
Midgut	2 ± 0	0 of 4	1.60	None
Tubule	2 ± 0	0 of 4	1.50	None
Hindgut	3 ± 0	1 of 4	2.00	Up
Heart	0 ± 0	0 of 4	0.26	None
Fat body	1 ± 2	1 of 4	0.94	None
Ovary	2 ± 0	0 of 4	1.50	None
Testis	1 ± 0	0 of 4	0.90	None
Male accessory glands	3 ± 1	0 of 4	1.90	None
Virgin spermatheca	0 ± 0	0 of 4	0.42	None
Mated spermatheca	3 ± 1	1 of 4	2.15	None
Adult carcass	7 ± 2	0 of 4	4.40	None
Larval CNS	0 ± 0	0 of 4	0.60	None
Larval Salivary gland	3 ± 0	0 of 4	2.37	None
Larval midgut	2 ± 0	0 of 4	1.55	None
Larval tubule	2 ± 0	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	1.23	None
Larval fat body	4 ± 1	0 of 4	2.40	None
Larval trachea	1 ± 1	0 of 4	0.91	None
Larval carcass	2 ± 0	0 of 4	1.69	None
S2 cells (growing)	1 ± 0	0 of 4	0.88	None
Whole fly	1 ± 0	0 of 4

(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4885215-4885827 (+) // 100.0 //
Probeset : 1624625_a_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.40	None
Head	0 ± 0	0 of 4	0.50	None
Eye	0 ± 0	0 of 4	0.43	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.50	None
Salivary gland	4 ± 3	0 of 4	3.48	None
Crop	2 ± 1	0 of 4	1.60	None
Midgut	1 ± 0	0 of 4	0.70	None
Tubule	2 ± 0	0 of 4	1.70	Up
Hindgut	2 ± 1	0 of 4	1.50	None
Heart	0 ± 0	0 of 4	0.36	None
Fat body	2 ± 2	0 of 4	1.71	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	2 ± 1	0 of 4	2.00	None
Male accessory glands	1 ± 0	0 of 4	0.70	None
Virgin spermatheca	1 ± 0	0 of 4	0.84	None
Mated spermatheca	2 ± 0	0 of 4	1.80	None
Adult carcass	1 ± 0	0 of 4	1.20	None
Larval CNS	1 ± 1	0 of 4	1.04	None
Larval Salivary gland	2 ± 0	0 of 4	1.75	None
Larval midgut	1 ± 0	0 of 4	1.21	None
Larval tubule	1 ± 0	0 of 4	0.80	None
Larval hindgut	2 ± 0	0 of 4	1.43	None
Larval fat body	3 ± 1	0 of 4	2.80	None
Larval trachea	1 ± 1	0 of 4	0.96	None
Larval carcass	1 ± 0	0 of 4	1.12	None
S2 cells (growing)	0 ± 0	0 of 4	0.39	None
Whole fly	1 ± 0	0 of 4

(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4886100-4889704 (+) // 100.0 //
Probeset : 1627203_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.50	None
Head	0 ± 0	0 of 4	0.60	None
Eye	0 ± 0	0 of 4	2.06	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.20	None
Salivary gland	5 ± 1	0 of 4	12.59	Up
Crop	0 ± 0	0 of 4	2.10	None
Midgut	1 ± 1	0 of 4	4.40	None
Tubule	3 ± 0	0 of 4	8.90	Up
Hindgut	0 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	1.41	None
Fat body	1 ± 1	0 of 4	4.29	None
Ovary	2 ± 0	0 of 4	4.60	None
Testis	0 ± 0	0 of 4	0.60	None
Male accessory glands	1 ± 0	0 of 4	2.20	None
Virgin spermatheca	2 ± 0	1 of 4	5.06	None
Mated spermatheca	2 ± 1	0 of 4	5.00	None
Adult carcass	0 ± 0	0 of 4	1.60	None
Larval CNS	0 ± 0	0 of 4	0.65	None
Larval Salivary gland	2 ± 1	0 of 4	6.53	None
Larval midgut	0 ± 0	0 of 4	0.82	None
Larval tubule	0 ± 0	0 of 4	1.20	None
Larval hindgut	0 ± 0	0 of 4	0.94	None
Larval fat body	0 ± 0	0 of 4	1.70	None
Larval trachea	0 ± 1	0 of 4	2.06	None
Larval carcass	0 ± 0	0 of 4	0.71	None
S2 cells (growing)	0 ± 0	0 of 4	0.82	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0035581. 5 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720