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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035581 through 18771 annotations produced 5 hits



(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4886100-4889704 (+) // 100.0 //
Probeset : 1627203_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head0 00 of 4 0.60None
Eye0 00 of 4 2.06None
Thoracicoabdominal ganglion0 00 of 4 1.20None
Salivary gland5 10 of 412.59Up
Crop0 00 of 4 2.10None
Midgut1 10 of 4 4.40None
Tubule3 00 of 4 8.90Up
Hindgut0 00 of 4 0.90None
Heart0 00 of 4 1.41None
Fat body1 10 of 4 4.29None
Ovary2 00 of 4 4.60None
Testis0 00 of 4 0.60None
Male accessory glands1 00 of 4 2.20None
Virgin spermatheca2 01 of 4 5.06None
Mated spermatheca2 10 of 4 5.00None
Adult carcass0 00 of 4 1.60None
Larval CNS0 00 of 4 0.65None
Larval Salivary gland2 10 of 4 6.53None
Larval midgut0 00 of 4 0.82None
Larval tubule0 00 of 4 1.20None
Larval hindgut0 00 of 4 0.94None
Larval fat body0 00 of 4 1.70None
Larval trachea0 10 of 4 2.06None
Larval carcass0 00 of 4 0.71None
S2 cells (growing)0 00 of 4 0.82None
Whole fly0 00 of 4



(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4885215-4885827 (+) // 100.0 //
Probeset : 1637232_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 11 of 4 1.00None
Head3 10 of 4 2.00None
Eye0 00 of 4 0.57None
Thoracicoabdominal ganglion2 10 of 4 1.70None
Salivary gland2 10 of 4 1.54None
Crop2 00 of 4 1.40None
Midgut2 00 of 4 1.60None
Tubule2 00 of 4 1.50None
Hindgut3 01 of 4 2.00Up
Heart0 00 of 4 0.26None
Fat body1 21 of 4 0.94None
Ovary2 00 of 4 1.50None
Testis1 00 of 4 0.90None
Male accessory glands3 10 of 4 1.90None
Virgin spermatheca0 00 of 4 0.42None
Mated spermatheca3 11 of 4 2.15None
Adult carcass7 20 of 4 4.40None
Larval CNS0 00 of 4 0.60None
Larval Salivary gland3 00 of 4 2.37None
Larval midgut2 00 of 4 1.55None
Larval tubule2 00 of 4 1.50None
Larval hindgut2 00 of 4 1.23None
Larval fat body4 10 of 4 2.40None
Larval trachea1 10 of 4 0.91None
Larval carcass2 00 of 4 1.69None
S2 cells (growing)1 00 of 4 0.88None
Whole fly1 00 of 4



(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4861459-4895291 (+) // 100.0 //
Probeset : 1628360_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 11 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland8 20 of 4 0.43Down
Crop2 10 of 4 0.10Down
Midgut4 10 of 4 0.20Down
Tubule4 00 of 4 0.20Down
Hindgut2 10 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body3 30 of 4 0.16Down
Ovary1 00 of 4 0.10Down
Testis391 154 of 420.60Up
Male accessory glands6 10 of 4 0.30Down
Virgin spermatheca5 11 of 4 0.28Down
Mated spermatheca3 10 of 4 0.17Down
Adult carcass6 20 of 4 0.30Down
Larval CNS3 10 of 4 0.16Down
Larval Salivary gland4 10 of 4 0.22Down
Larval midgut2 11 of 4 0.15Down
Larval tubule4 01 of 4 0.20Down
Larval hindgut2 00 of 4 0.14Down
Larval fat body33 183 of 4 1.80None
Larval trachea1 10 of 4 0.08Down
Larval carcass3 11 of 4 0.16Down
S2 cells (growing)3 11 of 4 0.16Down
Whole fly19 34 of 4



(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4885215-4885827 (+) // 100.0 //
Probeset : 1624625_a_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head0 00 of 4 0.50None
Eye0 00 of 4 0.43None
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland4 30 of 4 3.48None
Crop2 10 of 4 1.60None
Midgut1 00 of 4 0.70None
Tubule2 00 of 4 1.70Up
Hindgut2 10 of 4 1.50None
Heart0 00 of 4 0.36None
Fat body2 20 of 4 1.71None
Ovary0 00 of 4 0.20None
Testis2 10 of 4 2.00None
Male accessory glands1 00 of 4 0.70None
Virgin spermatheca1 00 of 4 0.84None
Mated spermatheca2 00 of 4 1.80None
Adult carcass1 00 of 4 1.20None
Larval CNS1 10 of 4 1.04None
Larval Salivary gland2 00 of 4 1.75None
Larval midgut1 00 of 4 1.21None
Larval tubule1 00 of 4 0.80None
Larval hindgut2 00 of 4 1.43None
Larval fat body3 10 of 4 2.80None
Larval trachea1 10 of 4 0.96None
Larval carcass1 00 of 4 1.12None
S2 cells (growing)0 00 of 4 0.39None
Whole fly1 00 of 4



(CG17150):

Annotation Number : CG17150
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035581
Gbrowse : chr3L:4886100-4889704 (+) // 100.0 //
Probeset : 1623412_a_at
Accessions : protein= NP_001137885; /// NP_647937;, nucleotide= NM_001144413; /// NM_139680;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity /// 0030286 // dynein compl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0035581.
Homophila reports that CG17150 is a close match (7e-63) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 3 RNAi stocks for FBgn0035581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.70None
Head7 20 of 4 1.10None
Eye5 10 of 4 0.79None
Thoracicoabdominal ganglion7 20 of 4 1.00None
Salivary gland4 00 of 4 0.58None
Crop6 10 of 4 0.80None
Midgut5 21 of 4 0.80None
Tubule7 00 of 4 1.00None
Hindgut3 10 of 4 0.50None
Heart4 00 of 4 0.65None
Fat body7 20 of 4 1.03None
Ovary6 11 of 4 0.90None
Testis16 14 of 4 2.20Up
Male accessory glands7 10 of 4 1.00None
Virgin spermatheca5 10 of 4 0.75None
Mated spermatheca5 20 of 4 0.72None
Adult carcass11 40 of 4 1.50None
Larval CNS5 12 of 4 0.79None
Larval Salivary gland4 00 of 4 0.55Down
Larval midgut7 30 of 4 1.02None
Larval tubule7 21 of 4 1.00None
Larval hindgut4 10 of 4 0.56None
Larval fat body17 11 of 4 2.30Up
Larval trachea5 10 of 4 0.68None
Larval carcass5 10 of 4 0.71None
S2 cells (growing)6 00 of 4 0.84None
Whole fly7 10 of 4

Looking for FBgn0035581. 5 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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