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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035583 through 18771 annotations produced 1 hits



(CG13704):

Annotation Number : CG13704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035583
Gbrowse : chr3L:4898899-4900869 (+) // 100.0 //
Probeset : 1636910_at
Accessions : protein= NP_647939;, nucleotide= NM_139682;
FlyMine data for FBgn0035583.
BDGP gene expression has embryonic in situ data for CG13704: 11 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0035583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 01 of 4 0.00Down
Head212 214 of 4 0.50Down
Eye58 104 of 4 0.15Down
Thoracicoabdominal ganglion6 11 of 4 0.00Down
Salivary gland8 00 of 4 0.02Down
Crop21 33 of 4 0.10Down
Midgut3118 124 of 4 8.00Up
Tubule1428 744 of 4 3.70Up
Hindgut1092 304 of 4 2.80Up
Heart477 384 of 4 1.22None
Fat body908 1244 of 4 2.32Up
Ovary3 10 of 4 0.00Down
Testis23 24 of 4 0.10Down
Male accessory glands56 44 of 4 0.10Down
Virgin spermatheca795 314 of 4 2.03Up
Mated spermatheca728 464 of 4 1.86Up
Adult carcass499 154 of 4 1.30None
Larval CNS5 22 of 4 0.02Down
Larval Salivary gland15 31 of 4 0.04Down
Larval midgut2124 994 of 4 5.43Up
Larval tubule2414 694 of 4 6.20Up
Larval hindgut660 344 of 4 1.69Up
Larval fat body151 224 of 4 0.40Down
Larval trachea12 83 of 4 0.03Down
Larval carcass12 32 of 4 0.03Down
S2 cells (growing)6 11 of 4 0.02Down
Whole fly391 414 of 4

Looking for FBgn0035583. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime