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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035589 through 18771 annotations produced 1 hits



Charged multivesicular body protein 2b (CHMP2B):

Annotation Number : CG4618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035589
Gbrowse : chr3L:5132763-5133573 (+) // 100.0 //
Probeset : 1635521_at
Accessions : protein= NP_647947;, nucleotide= NM_139690;
FlyMine data for FBgn0035589.
BDGP gene expression has embryonic in situ data for CG4618: 4 pix of staining in 1 body parts.
Homophila reports that CG4618 is a close match (2e-26) to human gene CHMP2B;DMT1;VPS2B (NP_054762), a gene associated with Amyotrophic lateral sclerosis, CHMP2B-related (3);Dementia, familial, nonspecific, 600795 (3).
TRiP has 2 RNAi stocks for FBgn0035589 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 54 of 4 0.90None
Head92 ± 34 of 4 0.80Down
Eye127 ± 54 of 4 1.11None
Thoracicoabdominal ganglion122 ± 34 of 4 1.10None
Salivary gland192 ± 82 of 4 1.67Up
Crop217 ± 44 of 4 1.90Up
Midgut197 ± 104 of 4 1.70Up
Tubule302 ± 194 of 4 2.60Up
Hindgut156 ± 34 of 4 1.40Up
Heart143 ± 114 of 4 1.25None
Fat body96 ± 164 of 4 0.84None
Ovary133 ± 34 of 4 1.20Up
Testis72 ± 34 of 4 0.60Down
Male accessory glands113 ± 74 of 4 1.00None
Virgin spermatheca183 ± 54 of 4 1.60Up
Mated spermatheca182 ± 134 of 4 1.59Up
Adult carcass108 ± 94 of 4 0.90None
Larval CNS88 ± 64 of 4 0.77Down
Larval Salivary gland250 ± 84 of 4 2.18Up
Larval midgut181 ± 44 of 4 1.58Up
Larval tubule300 ± 94 of 4 2.60Up
Larval hindgut150 ± 44 of 4 1.31Up
Larval fat body159 ± 204 of 4 1.40None
Larval trachea137 ± 74 of 4 1.20Up
Larval carcass108 ± 94 of 4 0.95None
S2 cells (growing)244 ± 54 of 4 2.13Up
Whole fly114 ± 44 of 4

Looking for FBgn0035589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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