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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035590 through 18771 annotations produced 1 hits



(CG10673):

Annotation Number : CG10673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035590
Gbrowse : chr3L:5131779-5132454 (-) // 100.0 //
Probeset : 1636694_at
Accessions : protein= NP_647948;, nucleotide= NM_139691;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0035590.
BioGrid reports that CG10673 interacts with CG4272 CG8907 .
TRiP has 1 RNAi stocks for FBgn0035590 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 04 of 4 0.80Down
Head68 44 of 4 0.90None
Eye90 84 of 4 1.15None
Thoracicoabdominal ganglion69 54 of 4 0.90None
Salivary gland108 74 of 4 1.37Up
Crop89 34 of 4 1.10None
Midgut61 24 of 4 0.80Down
Tubule63 44 of 4 0.80Down
Hindgut90 24 of 4 1.10Up
Heart56 84 of 4 0.72None
Fat body62 44 of 4 0.79Down
Ovary107 34 of 4 1.40Up
Testis37 04 of 4 0.50Down
Male accessory glands151 194 of 4 1.90Up
Virgin spermatheca64 24 of 4 0.81Down
Mated spermatheca73 24 of 4 0.93None
Adult carcass63 34 of 4 0.80Down
Larval CNS140 74 of 4 1.77Up
Larval Salivary gland163 74 of 4 2.06Up
Larval midgut87 54 of 4 1.11None
Larval tubule73 24 of 4 0.90None
Larval hindgut102 64 of 4 1.29Up
Larval fat body80 84 of 4 1.00None
Larval trachea127 154 of 4 1.61Up
Larval carcass76 44 of 4 0.96None
S2 cells (growing)109 44 of 4 1.38Up
Whole fly79 24 of 4

Looking for FBgn0035590. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime