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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035593 through 18771 annotations produced 1 hits



(CG4603):

Annotation Number : CG4603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035593
Gbrowse : chr3L:5127310-5128772 (+) // 100.0 //
Probeset : 1626751_at
Accessions : protein= NP_647951;, nucleotide= NM_139694;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from elec
FlyMine data for FBgn0035593.
BioGrid reports that CG4603 interacts with CG8893 .
VDRC has 2 RNAi stocks for FBgn0035593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain292 ± 34 of 4 0.90None
Head302 ± 94 of 4 0.90None
Eye606 ± 104 of 4 1.81Up
Thoracicoabdominal ganglion316 ± 104 of 4 0.90None
Salivary gland198 ± 84 of 4 0.59Down
Crop286 ± 84 of 4 0.90Down
Midgut176 ± 34 of 4 0.50Down
Tubule262 ± 54 of 4 0.80Down
Hindgut255 ± 94 of 4 0.80Down
Heart195 ± 24 of 4 0.58Down
Fat body167 ± 34 of 4 0.50Down
Ovary465 ± 104 of 4 1.40Up
Testis654 ± 124 of 4 2.00Up
Male accessory glands148 ± 74 of 4 0.40Down
Virgin spermatheca298 ± 104 of 4 0.89Down
Mated spermatheca301 ± 74 of 4 0.90Down
Adult carcass283 ± 54 of 4 0.80Down
Larval CNS322 ± 254 of 4 0.96None
Larval Salivary gland317 ± 134 of 4 0.95None
Larval midgut236 ± 74 of 4 0.71Down
Larval tubule496 ± 44 of 4 1.50Up
Larval hindgut250 ± 84 of 4 0.75Down
Larval fat body454 ± 104 of 4 1.40Up
Larval trachea272 ± 264 of 4 0.81Down
Larval carcass397 ± 264 of 4 1.19None
S2 cells (growing)208 ± 34 of 4 0.62Down
Whole fly334 ± 104 of 4

Looking for FBgn0035593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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