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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035594 through 18771 annotations produced 1 hits



(CG4597):

Annotation Number : CG4597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035594
Gbrowse : chr3L:5122773-5123340 (+) // 100.0 //
Probeset : 1639751_at
Accessions : protein= NP_647952;, nucleotide= NM_139695;
FlyMine data for FBgn0035594.
BioGrid reports that CG4597 interacts with CG8367 .
VDRC has 1 RNAi stocks for FBgn0035594 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.50None
Eye2 ± 10 of 4 0.67None
Thoracicoabdominal ganglion4 ± 11 of 4 1.60None
Salivary gland8 ± 20 of 4 2.79None
Crop11 ± 14 of 4 3.80Up
Midgut6 ± 10 of 4 2.30None
Tubule3 ± 00 of 4 1.30Up
Hindgut4 ± 00 of 4 1.50None
Heart1 ± 00 of 4 0.50None
Fat body4 ± 20 of 4 1.60None
Ovary1 ± 00 of 4 0.50None
Testis0 ± 00 of 4 0.30None
Male accessory glands4 ± 10 of 4 1.60None
Virgin spermatheca4 ± 00 of 4 1.46None
Mated spermatheca3 ± 10 of 4 1.18None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS3 ± 11 of 4 1.11None
Larval Salivary gland5 ± 20 of 4 1.86None
Larval midgut6 ± 13 of 4 2.12None
Larval tubule4 ± 10 of 4 1.60None
Larval hindgut3 ± 00 of 4 1.07None
Larval fat body6 ± 31 of 4 2.00None
Larval trachea2 ± 21 of 4 0.78None
Larval carcass2 ± 10 of 4 1.00None
S2 cells (growing)5 ± 11 of 4 1.69None
Whole fly3 ± 10 of 4

Looking for FBgn0035594. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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