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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035598 through 18771 annotations produced 1 hits



/// (CG4669 /// DsimCG4669):

Annotation Number : CG4669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035598
Gbrowse : chr3L:5227578-5229734 (+) // 100.0 //
Probeset : 1624149_at
Accessions : protein= NP_647956;, nucleotide= NM_139699;
FlyMine data for FBgn0035598.
VDRC has 4 RNAi stocks for FBgn0035598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head4 ± 21 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body2 ± 30 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis2041 ± 734 of 4 7.80Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.00Down
Adult carcass6 ± 40 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut0 ± 00 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body235 ± 1304 of 4 0.90None
Larval trachea7 ± 101 of 4 0.03Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly263 ± 94 of 4

Looking for FBgn0035598. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime