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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035600 through 18771 annotations produced 1 hits



chr3L:5353289-5355898 (+) // 100.0 // (Ubiquinol-cytochrome c oxidoreductase Cytochrome C1):

Annotation Number : CG4769
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625412_at
Accessions : protein= , nucleotide= NP_647958;
Pathway : "0006119 // oxidative phosphorylation // inferred from sequence or structural similarity /// 0006122 // mitochondrial el
Interpro : ubiquinol to cytochrome c // inferred from sequence or structural similarity"
FlyMine data for full length.
BioGrid reports that CG4769 interacts with CG8725 CG9415 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2315 494 of 4 1.10None
Head2640 394 of 4 1.20Up
Eye2892 864 of 4 1.32Up
Thoracicoabdominal ganglion2928 424 of 4 1.30Up
Salivary gland3643 494 of 4 1.66Up
Crop2681 904 of 4 1.20Up
Midgut1755 574 of 4 0.80Down
Tubule3576 624 of 4 1.60Up
Hindgut3615 774 of 4 1.60Up
Heart3429 1554 of 4 1.56Up
Fat body2889 2094 of 4 1.32Up
Ovary1117 244 of 4 0.50Down
Testis122 24 of 4 0.10Down
Male accessory glands1160 224 of 4 0.50Down
Virgin spermatheca3495 1134 of 4 1.59Up
Mated spermatheca3372 1284 of 4 1.53Up
Adult carcass4884 2654 of 4 2.20Up
Larval CNS1303 774 of 4 0.59Down
Larval Salivary gland1328 294 of 4 0.60Down
Larval midgut1788 1044 of 4 0.81Down
Larval tubule1032 1114 of 4 0.50Down
Larval hindgut2554 1194 of 4 1.16None
Larval fat body558 534 of 4 0.30Down
Larval trachea1237 614 of 4 0.56Down
Larval carcass2898 2524 of 4 1.32None
S2 cells (growing)945 134 of 4 0.43Down
Whole fly2196 1014 of 4

Looking for FBgn0035600. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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