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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035601 through 18771 annotations produced 1 hits



Uev1A (Uev1A):

Annotation Number : CG10640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035601
Gbrowse : chr3L:5356251-5359325 (-) // 100.0 //
Probeset : 1624782_a_at
Accessions : protein= NP_647959; /// NP_729062;, nucleotide= NM_139702; /// NM_168117;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0035601.
BDGP gene expression has embryonic in situ data for Uev1A: 15 pix of staining in 10 body parts.
BioGrid reports that CG10640 interacts with CG11672 CG3075 CG31052 .
TRiP has 1 RNAi stocks for FBgn0035601 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain533 164 of 4 0.60Down
Head1083 734 of 4 1.20None
Eye2162 484 of 4 2.40Up
Thoracicoabdominal ganglion510 74 of 4 0.60Down
Salivary gland821 304 of 4 0.91None
Crop769 84 of 4 0.90Down
Midgut707 104 of 4 0.80Down
Tubule1410 494 of 4 1.60Up
Hindgut850 144 of 4 0.90None
Heart891 44 of 4 0.99None
Fat body890 874 of 4 0.99None
Ovary1161 184 of 4 1.30Up
Testis406 84 of 4 0.50Down
Male accessory glands711 134 of 4 0.80Down
Virgin spermatheca1177 824 of 4 1.31Up
Mated spermatheca1066 424 of 4 1.18Up
Adult carcass652 174 of 4 0.70Down
Larval CNS886 464 of 4 0.98None
Larval Salivary gland1063 94 of 4 1.18Up
Larval midgut679 114 of 4 0.75Down
Larval tubule1007 294 of 4 1.10Up
Larval hindgut986 114 of 4 1.09Up
Larval fat body1209 1094 of 4 1.30None
Larval trachea1014 394 of 4 1.13Up
Larval carcass1153 364 of 4 1.28Up
S2 cells (growing)746 94 of 4 0.83Down
Whole fly901 274 of 4

Looking for FBgn0035601. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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