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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035603 through 18771 annotations produced 1 hits



(CG10635):

Annotation Number : CG10635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035603
Gbrowse : chr3L:5360438-5361108 (-) // 100.0 //
Probeset : 1625875_at
Accessions : protein= NP_647961;, nucleotide= NM_139704;
Pathway : 0016272 // prefoldin complex // inferred from electronic annotation /// 0016272 // prefoldin complex // inferred from se
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0035603.
BioGrid reports that CG10635 interacts with CG10914 CG15468 .
VDRC has 4 RNAi stocks for FBgn0035603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain408 ± 44 of 4 1.10None
Head287 ± 74 of 4 0.80Down
Eye331 ± 104 of 4 0.89None
Thoracicoabdominal ganglion413 ± 214 of 4 1.10None
Salivary gland116 ± 94 of 4 0.31Down
Crop324 ± 234 of 4 0.90None
Midgut208 ± 74 of 4 0.60Down
Tubule187 ± 144 of 4 0.50Down
Hindgut297 ± 74 of 4 0.80Down
Heart231 ± 114 of 4 0.62Down
Fat body159 ± 74 of 4 0.43Down
Ovary665 ± 194 of 4 1.80Up
Testis243 ± 84 of 4 0.70Down
Male accessory glands268 ± 84 of 4 0.70Down
Virgin spermatheca234 ± 94 of 4 0.63Down
Mated spermatheca298 ± 214 of 4 0.80Down
Adult carcass196 ± 24 of 4 0.50Down
Larval CNS492 ± 184 of 4 1.32Up
Larval Salivary gland237 ± 44 of 4 0.63Down
Larval midgut165 ± 124 of 4 0.44Down
Larval tubule277 ± 94 of 4 0.70Down
Larval hindgut352 ± 134 of 4 0.94None
Larval fat body149 ± 54 of 4 0.40Down
Larval trachea397 ± 634 of 4 1.06None
Larval carcass346 ± 294 of 4 0.93None
S2 cells (growing)185 ± 94 of 4 0.50Down
Whole fly374 ± 184 of 4

Looking for FBgn0035603. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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