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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035604 through 18771 annotations produced 1 hits



CG10633 (Ir64a):

Annotation Number : CG10633
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035604
Gbrowse : chr3L:5371885-5375921 (-) // 100.0 //
Probeset : 1633636_at
Accessions : protein= NP_647962;, nucleotide= NM_139705;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0035604.
VDRC has 1 RNAi stocks for FBgn0035604 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.70None
Head15 14 of 4 2.20Up
Eye5 00 of 4 0.70None
Thoracicoabdominal ganglion8 02 of 4 1.10None
Salivary gland27 11 of 4 3.79Up
Crop9 31 of 4 1.40None
Midgut21 31 of 4 3.00Up
Tubule14 13 of 4 2.00Up
Hindgut7 21 of 4 1.00None
Heart2 10 of 4 0.38Down
Fat body18 34 of 4 2.53Up
Ovary5 00 of 4 0.80None
Testis6 01 of 4 0.90None
Male accessory glands12 21 of 4 1.70None
Virgin spermatheca24 24 of 4 3.31Up
Mated spermatheca31 54 of 4 4.40Up
Adult carcass20 41 of 4 2.80Up
Larval CNS12 44 of 4 1.77None
Larval Salivary gland10 11 of 4 1.42None
Larval midgut18 33 of 4 2.49Up
Larval tubule9 23 of 4 1.30None
Larval hindgut9 13 of 4 1.27None
Larval fat body6 11 of 4 0.80None
Larval trachea5 10 of 4 0.70None
Larval carcass6 21 of 4 0.92None
S2 cells (growing)8 01 of 4 1.22None
Whole fly7 12 of 4

Looking for FBgn0035604. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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