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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035607 through 18771 annotations produced 1 hits



(CG4835):

Annotation Number : CG4835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035607
Gbrowse : chr3L:5473235-5476763 (+) // 100.0 //
Probeset : 1633214_at
Accessions : protein= NP_647965;, nucleotide= NM_139708;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0035607.
BioGrid reports that CG4835 interacts with CG8764 CG4863 CG4991 CG5094 CG5119 CG5193 CG5288 CG7361 CG9184 CG9291 CG9975 .
VDRC has 1 RNAi stocks for FBgn0035607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 10 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland19 20 of 4 0.52Down
Crop2 10 of 4 0.10Down
Midgut472 334 of 412.40Up
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart1 00 of 4 0.04Down
Fat body11 50 of 4 0.30Down
Ovary0 00 of 4 0.00Down
Testis11 03 of 4 0.30Down
Male accessory glands3 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.07Down
Mated spermatheca4 20 of 4 0.12Down
Adult carcass2 10 of 4 0.10Down
Larval CNS4 30 of 4 0.12Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut2400 1694 of 463.01Up
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 10 of 4 0.05Down
Larval fat body4 10 of 4 0.10Down
Larval trachea0 00 of 4 0.01Down
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.02Down
Whole fly38 23 of 4

Looking for FBgn0035607. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime