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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035611 through 18771 annotations produced 1 hits



(CG13285):

Annotation Number : CG13285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035611
Gbrowse : chr3L:5527924-5528757 (-) // 100.0 //
Probeset : 1639440_at
Accessions : protein= NP_647969;, nucleotide= NM_139712;
FlyMine data for FBgn0035611.
VDRC has 2 RNAi stocks for FBgn0035611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20Down
Head36 44 of 4 1.40None
Eye8 22 of 4 0.33Down
Thoracicoabdominal ganglion8 11 of 4 0.30Down
Salivary gland1093 194 of 442.52Up
Crop8 22 of 4 0.30Down
Midgut45 04 of 4 1.80Up
Tubule17 52 of 4 0.70None
Hindgut882 244 of 434.30Up
Heart2 00 of 4 0.09Down
Fat body5 20 of 4 0.20Down
Ovary1 00 of 4 0.10Down
Testis51 34 of 4 2.00Up
Male accessory glands8 10 of 4 0.30Down
Virgin spermatheca2 10 of 4 0.10Down
Mated spermatheca3 10 of 4 0.12Down
Adult carcass15 23 of 4 0.60None
Larval CNS5 13 of 4 0.20Down
Larval Salivary gland412 84 of 416.02Up
Larval midgut91 174 of 4 3.56Up
Larval tubule13 72 of 4 0.50None
Larval hindgut398 284 of 415.50Up
Larval fat body7 10 of 4 0.30Down
Larval trachea13 93 of 4 0.52None
Larval carcass8 22 of 4 0.34Down
S2 cells (growing)2 00 of 4 0.09Down
Whole fly25 44 of 4

Looking for FBgn0035611. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime