FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035612 through 18771 annotations produced 1 hits

(CG10625):

Annotation Number : CG10625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035612
Gbrowse : chr3L:5531716-5544257 (-) // 99.82 //
Probeset : 1633164_s_at
Accessions : protein= NP_001097510; /// NP_001097512; /// NP_001137887; /// NP_001137888; /// NP_001137889; /// NP_001137890; /// NP_647970; /// NP_729073; /// NP_729074; /// NP_729075;, nucleotide= NM_001104040; /// NM_001104042; /// NM_001144415; /// NM_001144416; /// NM_001144417; /// NM_001144418; /// NM_139713; /// NM_168119; /// NM_168120; /// NM_168121;
Interpro : 0042302 // structural constituent of cuticle // inferred from electronic annotation
FlyMine data for FBgn0035612.
BDGP gene expression has embryonic in situ data for CG10625: 13 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0035612 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035612 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 3	3 of 4	0.40	Down
Head	12 ± 1	0 of 4	0.40	Down
Eye	38 ± 12	1 of 4	1.06	None
Thoracicoabdominal ganglion	25 ± 3	2 of 4	0.70	None
Salivary gland	55 ± 8	2 of 4	1.53	None
Crop	289 ± 6	4 of 4	8.00	Up
Midgut	8 ± 2	0 of 4	0.20	Down
Tubule	11 ± 1	0 of 4	0.30	Down
Hindgut	137 ± 4	4 of 4	3.80	Up
Heart	9 ± 0	0 of 4	0.26	Down
Fat body	21 ± 8	1 of 4	0.61	None
Ovary	10 ± 2	0 of 4	0.30	Down
Testis	7 ± 2	0 of 4	0.20	Down
Male accessory glands	8 ± 3	0 of 4	0.20	Down
Virgin spermatheca	35 ± 2	1 of 4	0.99	None
Mated spermatheca	44 ± 1	4 of 4	1.23	None
Adult carcass	24 ± 5	0 of 4	0.70	None
Larval CNS	21 ± 4	4 of 4	0.60	Down
Larval Salivary gland	125 ± 7	4 of 4	3.49	Up
Larval midgut	60 ± 4	1 of 4	1.70	Up
Larval tubule	16 ± 0	0 of 4	0.50	Down
Larval hindgut	1801 ± 67	4 of 4	50.15	Up
Larval fat body	18 ± 1	0 of 4	0.50	Down
Larval trachea	1833 ± 108	4 of 4	51.04	Up
Larval carcass	3453 ± 241	4 of 4	96.13	Up
S2 cells (growing)	15 ± 2	0 of 4	0.43	Down
Whole fly	35 ± 4	3 of 4

Looking for FBgn0035612. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720