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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035621 through 18771 annotations produced 1 hits



(CG10591):

Annotation Number : CG10591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035621
Gbrowse : chr3L:5591656-5592789 (-) // 100.0 //
Probeset : 1639376_at
Accessions : protein= NP_647978;, nucleotide= NM_139721;
FlyMine data for FBgn0035621.
BDGP gene expression has embryonic in situ data for CG10591: 29 pix of staining in 6 body parts.
BioGrid reports that CG10591 interacts with CG1472 CG8292 CG8725 CG8997 .
VDRC has 2 RNAi stocks for FBgn0035621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10None
Head6 10 of 4 0.20None
Eye3 10 of 4 0.13None
Thoracicoabdominal ganglion8 21 of 4 0.30None
Salivary gland28 70 of 4 0.91None
Crop14 50 of 4 0.50None
Midgut14 30 of 4 0.50None
Tubule6 00 of 4 0.20Down
Hindgut12 10 of 4 0.40None
Heart3 00 of 4 0.10None
Fat body7 50 of 4 0.24None
Ovary6 00 of 4 0.20None
Testis5 10 of 4 0.20None
Male accessory glands7 20 of 4 0.20None
Virgin spermatheca6 20 of 4 0.22None
Mated spermatheca4 10 of 4 0.16None
Adult carcass10 30 of 4 0.30None
Larval CNS5 10 of 4 0.18None
Larval Salivary gland4 10 of 4 0.15None
Larval midgut14 20 of 4 0.46None
Larval tubule9 10 of 4 0.30None
Larval hindgut6 10 of 4 0.20None
Larval fat body9 20 of 4 0.30None
Larval trachea2 10 of 4 0.07None
Larval carcass15 10 of 4 0.51None
S2 cells (growing)10 10 of 4 0.34None
Whole fly30 103 of 4

Looking for FBgn0035621. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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