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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035622 through 18771 annotations produced 1 hits



(CG10590):

Annotation Number : CG10590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035622
Gbrowse : chr3L:5594181-5597075 (-) // 100.0 //
Probeset : 1624176_at
Accessions : protein= NP_647979;, nucleotide= NM_139722;
Pathway : 0005768 // endosome // inferred from sequence or structural similarity /// 0016021 // integral to membrane // inferred f
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035622.
BDGP gene expression has embryonic in situ data for CG10590: 4 pix of staining in 1 body parts.
BioGrid reports that CG10590 interacts with CG11753 .
VDRC has 3 RNAi stocks for FBgn0035622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 94 of 4 1.10None
Head173 104 of 4 0.90None
Eye81 24 of 4 0.43Down
Thoracicoabdominal ganglion231 144 of 4 1.20None
Salivary gland1098 954 of 4 5.76Up
Crop179 34 of 4 0.90None
Midgut242 54 of 4 1.30Up
Tubule257 144 of 4 1.30Up
Hindgut206 114 of 4 1.10None
Heart101 94 of 4 0.53Down
Fat body358 434 of 4 1.88Up
Ovary365 154 of 4 1.90Up
Testis73 34 of 4 0.40Down
Male accessory glands1371 884 of 4 7.20Up
Virgin spermatheca420 324 of 4 2.20Up
Mated spermatheca501 444 of 4 2.62Up
Adult carcass129 14 of 4 0.70Down
Larval CNS455 504 of 4 2.39Up
Larval Salivary gland2087 1144 of 410.93Up
Larval midgut316 54 of 4 1.66Up
Larval tubule355 264 of 4 1.90Up
Larval hindgut408 44 of 4 2.14Up
Larval fat body248 304 of 4 1.30None
Larval trachea159 234 of 4 0.84None
Larval carcass373 214 of 4 1.96Up
S2 cells (growing)624 214 of 4 3.27Up
Whole fly190 144 of 4

Looking for FBgn0035622. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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