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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035623 through 18771 annotations produced 1 hits



Mth-like 2 (mthl2):

Annotation Number : CG17795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035623
Gbrowse : chr3L:5597887-5600288 (+) // 100.0 //
Probeset : 1636333_a_at
Accessions : protein= NP_788462;, nucleotide= NM_176284;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035623.
BDGP gene expression has embryonic in situ data for CG17795: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0035623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 1.30None
Head32 ± 44 of 4 5.00Up
Eye7 ± 12 of 4 1.20None
Thoracicoabdominal ganglion3 ± 11 of 4 0.60None
Salivary gland9 ± 21 of 4 1.40None
Crop3 ± 00 of 4 0.50Down
Midgut1 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.50Down
Hindgut0 ± 00 of 4 0.10Down
Heart157 ± 264 of 424.30Up
Fat body7 ± 14 of 4 1.14None
Ovary0 ± 00 of 4 0.10Down
Testis5 ± 04 of 4 0.80None
Male accessory glands12 ± 13 of 4 1.90Up
Virgin spermatheca5 ± 01 of 4 0.85None
Mated spermatheca5 ± 10 of 4 0.76None
Adult carcass30 ± 24 of 4 4.70Up
Larval CNS0 ± 00 of 4 0.12Down
Larval Salivary gland3 ± 10 of 4 0.54None
Larval midgut1 ± 10 of 4 0.24Down
Larval tubule13 ± 24 of 4 2.00Up
Larval hindgut5 ± 02 of 4 0.91None
Larval fat body14 ± 33 of 4 2.20None
Larval trachea7 ± 32 of 4 1.09None
Larval carcass28 ± 14 of 4 4.40Up
S2 cells (growing)15 ± 24 of 4 2.43Up
Whole fly6 ± 12 of 4

Looking for FBgn0035623. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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