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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035631 through 18771 annotations produced 1 hits



Thioredoxin-like (Txl):

Annotation Number : CG5495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035631
Gbrowse : chr3L:5758946-5760213 (+) // 100.0 //
Probeset : 1627497_at
Accessions : protein= NP_523938;, nucleotide= NM_079214;
Interpro : 0015036 // disulfide oxidoreductase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0035631.
VDRC has 3 RNAi stocks for FBgn0035631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 ± 94 of 4 0.50Down
Head400 ± 124 of 4 0.60Down
Eye619 ± 154 of 4 0.95None
Thoracicoabdominal ganglion288 ± 54 of 4 0.40Down
Salivary gland662 ± 114 of 4 1.02None
Crop701 ± 194 of 4 1.10None
Midgut597 ± 194 of 4 0.90None
Tubule778 ± 394 of 4 1.20Up
Hindgut527 ± 104 of 4 0.80Down
Heart767 ± 154 of 4 1.18Up
Fat body633 ± 204 of 4 0.97None
Ovary894 ± 24 of 4 1.40Up
Testis448 ± 164 of 4 0.70Down
Male accessory glands661 ± 164 of 4 1.00None
Virgin spermatheca792 ± 194 of 4 1.22Up
Mated spermatheca786 ± 474 of 4 1.21None
Adult carcass595 ± 154 of 4 0.90None
Larval CNS656 ± 294 of 4 1.01None
Larval Salivary gland940 ± 124 of 4 1.45Up
Larval midgut891 ± 1074 of 4 1.37None
Larval tubule1504 ± 564 of 4 2.30Up
Larval hindgut811 ± 594 of 4 1.25None
Larval fat body845 ± 674 of 4 1.30None
Larval trachea857 ± 854 of 4 1.32Up
Larval carcass1296 ± 1084 of 4 2.00Up
S2 cells (growing)693 ± 34 of 4 1.07None
Whole fly649 ± 244 of 4

Looking for FBgn0035631. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime