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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035632 through 18771 annotations produced 1 hits



CG10575 (Ppat-Dpck):

Annotation Number : CG10575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035632
Gbrowse : chr3L:5760235-5761859 (-) // 100.0 //
Probeset : 1641488_at
Accessions : protein= NP_647985;, nucleotide= NM_139728;
Pathway : nurse cell to oocyte // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
Interpro : 0005737 // cytoplasm // inferred from electronic annotation
FlyMine data for FBgn0035632.
BioGrid reports that CG10575 interacts with CG3953 CG9986 .
TRiP has 1 RNAi stocks for FBgn0035632 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035632 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 14 of 4 0.50Down
Head115 114 of 4 1.00None
Eye77 24 of 4 0.64Down
Thoracicoabdominal ganglion51 44 of 4 0.40Down
Salivary gland79 94 of 4 0.66Down
Crop269 104 of 4 2.20Up
Midgut282 134 of 4 2.30Up
Tubule408 304 of 4 3.40Up
Hindgut230 54 of 4 1.90Up
Heart250 114 of 4 2.08Up
Fat body447 684 of 4 3.71Up
Ovary209 114 of 4 1.70Up
Testis11 04 of 4 0.10Down
Male accessory glands35 24 of 4 0.30Down
Virgin spermatheca169 74 of 4 1.41Up
Mated spermatheca173 174 of 4 1.44Up
Adult carcass271 204 of 4 2.30Up
Larval CNS53 24 of 4 0.44Down
Larval Salivary gland98 84 of 4 0.81None
Larval midgut262 174 of 4 2.18Up
Larval tubule567 154 of 4 4.70Up
Larval hindgut155 144 of 4 1.29None
Larval fat body415 544 of 4 3.40Up
Larval trachea63 54 of 4 0.53Down
Larval carcass82 44 of 4 0.69None
S2 cells (growing)67 04 of 4 0.56Down
Whole fly120 124 of 4

Looking for FBgn0035632. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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