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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035638 through 18771 annotations produced 1 hits


TEKTIN C (Tektin-C):

Annotation Number : CG10541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035638
Gbrowse : chr3L:5787499-5789492 (-) // 100.0 //
Probeset : 1628238_at
Accessions : protein= NP_001097520; /// NP_523940;, nucleotide= NM_001104050; /// NM_079216;
Pathway : 0005874 // microtubule // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred
Interpro : 0008017 // microtubule binding // inferred from sequence or structural similarity
FlyMine data for FBgn0035638.
BDGP gene expression has embryonic in situ data for Tektin-C: 16 pix of staining in 5 body parts.
BioGrid reports that CG10541 interacts with CG11486 CG11870 CG12768 CG13741 CG14900 CG32444 CG3388 CG3924 CG4183 CG4454 CG5165 CG5252 CG5263 CG5502 CG8571 CG8679 CG9214 CG33126 .
VDRC has 2 RNAi stocks for FBgn0035638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 00 of 4 0.20Down
Head14 ± 10 of 4 0.20Down
Eye5 ± 21 of 4 0.10Down
Thoracicoabdominal ganglion10 ± 00 of 4 0.20Down
Salivary gland7 ± 20 of 4 0.13Down
Crop4 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut7 ± 10 of 4 0.10Down
Heart3 ± 20 of 4 0.06Down
Fat body3 ± 20 of 4 0.06Down
Ovary2 ± 10 of 4 0.00Down
Testis886 ± 174 of 414.70Up
Male accessory glands7 ± 30 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.04Down
Mated spermatheca8 ± 20 of 4 0.15Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland5 ± 20 of 4 0.09Down
Larval midgut3 ± 10 of 4 0.06Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body66 ± 292 of 4 1.10None
Larval trachea7 ± 52 of 4 0.13Down
Larval carcass4 ± 10 of 4 0.07Down
S2 cells (growing)5 ± 20 of 4 0.09Down
Whole fly60 ± 34 of 4

Looking for FBgn0035638. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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