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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035640 through 18771 annotations produced 1 hits

mad2 (mad2):

Annotation Number : CG17498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035640
Gbrowse : chr3L:5805231-5806183 (-) // 100.0 //
Probeset : 1640938_at
Accessions : protein= NP_647991;, nucleotide= NM_139734;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural simi
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035640.
BDGP gene expression has embryonic in situ data for CG17498: 12 pix of staining in 13 body parts.
BioGrid reports that CG17498 interacts with CG32000 CG7296 CG14534 CG5352 CG11182 CG2063 CG14884 CG3629 CG11546 CG14827 CG11802 CG6233 CG6103 CG14254 CG17746 CG5568 CG6163 CG31811 CG31045 CG31038 CG6488 CG30440 CG17706 CG11120 CG2189 CG13625 CG2711 CG3415 CG1550 CG4264 CG33553 CG2116 CG9108 CG7602 CG11380 CG32169 CG7182 CG15475 CG33484 CG3184 CG33275 CG13834 .
TRiP has 1 RNAi stocks for FBgn0035640 available for purchase.
VDRC has 5 RNAi stocks for FBgn0035640 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 14 of 4 0.00Down
Head13 13 of 4 0.00Down
Eye10 23 of 4 0.04Down
Thoracicoabdominal ganglion24 34 of 4 0.10Down
Salivary gland10 20 of 4 0.04Down
Crop18 21 of 4 0.10Down
Midgut18 20 of 4 0.10Down
Tubule13 11 of 4 0.00Down
Hindgut15 21 of 4 0.10Down
Heart14 22 of 4 0.05Down
Fat body11 50 of 4 0.04Down
Ovary672 104 of 4 2.30Up
Testis251 34 of 4 0.80Down
Male accessory glands11 20 of 4 0.00Down
Virgin spermatheca12 21 of 4 0.04Down
Mated spermatheca11 12 of 4 0.04Down
Adult carcass17 20 of 4 0.10Down
Larval CNS391 94 of 4 1.32Up
Larval Salivary gland16 04 of 4 0.06Down
Larval midgut24 34 of 4 0.08Down
Larval tubule18 14 of 4 0.10Down
Larval hindgut30 44 of 4 0.10Down
Larval fat body52 204 of 4 0.20Down
Larval trachea100 94 of 4 0.34Down
Larval carcass43 34 of 4 0.15Down
S2 cells (growing)306 44 of 4 1.03None
Whole fly297 104 of 4

Looking for FBgn0035640. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime