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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035641 through 18771 annotations produced 2 hits



(CG5568):

Annotation Number : CG5568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035641
Gbrowse : chr3L:5864601-5866619 (+) // 100.0 //
Probeset : 1623330_at
Accessions : protein= NP_647992;, nucleotide= NM_139735;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016207 // 4-coumarate-CoA ligase activity // i
FlyMine data for FBgn0035641.
BDGP gene expression has embryonic in situ data for CG5568: 4 pix of staining in 1 body parts.
BioGrid reports that CG5568 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0035641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland3 10 of 4 0.07Down
Crop2 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule3 10 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart1 10 of 4 0.03Down
Fat body3 20 of 4 0.07Down
Ovary150 124 of 4 2.70Up
Testis2 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.04Down
Mated spermatheca2 10 of 4 0.04Down
Adult carcass4 21 of 4 0.10Down
Larval CNS0 10 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.06Down
Larval midgut1 00 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.04Down
Larval fat body0 00 of 4 0.00Down
Larval trachea3 11 of 4 0.06Down
Larval carcass2 10 of 4 0.04Down
S2 cells (growing)17 14 of 4 0.31Down
Whole fly55 54 of 4



/// (CG18586 /// CG5568):

Annotation Number : CG18586
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035642
Gbrowse : chr3L:5866732-5868479 (+) // 100.0 //
Probeset : 1623300_at
Accessions : protein= NP_647993;, nucleotide= NM_139736;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016207 // 4-coumarate-CoA ligase activity // i
FlyMine data for FBgn0035642.
VDRC has 3 RNAi stocks for FBgn0035642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye5 10 of 4 0.10Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 20 of 4 0.09Down
Crop3 00 of 4 0.10Down
Midgut1 10 of 4 0.00Down
Tubule3 10 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body3 10 of 4 0.07Down
Ovary172 44 of 4 3.40Up
Testis2 10 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.03Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass5 20 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut2 10 of 4 0.05Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.04Down
Larval fat body4 10 of 4 0.10Down
Larval trachea3 10 of 4 0.06Down
Larval carcass2 10 of 4 0.05Down
S2 cells (growing)13 04 of 4 0.28Down
Whole fly50 54 of 4

Looking for FBgn0035641. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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