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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035648 through 18771 annotations produced 1 hits


Annotation Number : CG13288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035648
Gbrowse : chr3L:5900904-5902849 (+) // 100.0 //
Probeset : 1640392_at
Accessions : protein= NP_001097522;, nucleotide= NM_001104052;
FlyMine data for FBgn0035648.
VDRC has 1 RNAi stocks for FBgn0035648 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 24 of 4 2.00Up
Head8 04 of 4 0.90None
Eye5 00 of 4 0.60Down
Thoracicoabdominal ganglion25 24 of 4 2.80Up
Salivary gland15 30 of 4 1.72None
Crop5 11 of 4 0.60None
Midgut17 23 of 4 1.90Up
Tubule10 01 of 4 1.10Up
Hindgut9 02 of 4 1.10None
Heart2 10 of 4 0.32Down
Fat body11 21 of 4 1.23None
Ovary6 01 of 4 0.70None
Testis8 04 of 4 0.90None
Male accessory glands85 64 of 4 9.50Up
Virgin spermatheca8 11 of 4 0.91None
Mated spermatheca8 12 of 4 0.91None
Adult carcass10 22 of 4 1.20None
Larval CNS17 24 of 4 1.89Up
Larval Salivary gland8 11 of 4 0.93None
Larval midgut14 02 of 4 1.64Up
Larval tubule12 13 of 4 1.40None
Larval hindgut4 00 of 4 0.48Down
Larval fat body17 33 of 4 2.00None
Larval trachea5 10 of 4 0.59Down
Larval carcass9 01 of 4 1.01None
S2 cells (growing)7 02 of 4 0.84None
Whole fly9 12 of 4

Looking for FBgn0035648. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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