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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035649 through 18771 annotations produced 1 hits


Annotation Number : CG10483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035649
Gbrowse : chr3L:5911002-5914398 (-) // 100.0 //
Probeset : 1635198_at
Accessions : protein= NP_648000;, nucleotide= NM_139743;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0035649.
BioGrid reports that CG10483 interacts with CG3403 CG12470 CG7392 .
TRiP has 1 RNAi stocks for FBgn0035649 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035649 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 54 of 417.80Up
Head67 24 of 4 4.00Up
Eye28 34 of 4 1.68None
Thoracicoabdominal ganglion304 134 of 418.10Up
Salivary gland6 30 of 4 0.37Down
Crop144 84 of 4 8.60Up
Midgut22 24 of 4 1.30None
Tubule13 12 of 4 0.80Down
Hindgut73 24 of 4 4.40Up
Heart42 74 of 4 2.52Up
Fat body7 42 of 4 0.42Down
Ovary3 00 of 4 0.20Down
Testis31 24 of 4 1.90Up
Male accessory glands30 34 of 4 1.80Up
Virgin spermatheca4 10 of 4 0.27Down
Mated spermatheca10 12 of 4 0.59None
Adult carcass34 34 of 4 2.10Up
Larval CNS78 94 of 4 4.65Up
Larval Salivary gland2 10 of 4 0.12Down
Larval midgut16 14 of 4 1.00None
Larval tubule4 11 of 4 0.30Down
Larval hindgut65 104 of 4 3.87Up
Larval fat body3 10 of 4 0.20Down
Larval trachea8 33 of 4 0.49Down
Larval carcass127 124 of 4 7.55Up
S2 cells (growing)5 01 of 4 0.31Down
Whole fly16 24 of 4

Looking for FBgn0035649. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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