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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035656 through 18771 annotations produced 1 hits



(CG10479):

Annotation Number : CG10479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035656
Gbrowse : chr3L:5960640-5969105 (-) // 100.0 //
Probeset : 1640221_at
Accessions : protein= NP_648006;, nucleotide= NM_139749;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0035656.
BDGP gene expression has embryonic in situ data for CG10479: 123 pix of staining in 41 body parts.
BioGrid reports that CG10479 interacts with CG7238 .
VDRC has 2 RNAi stocks for FBgn0035656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 54 of 4 1.50Up
Head63 ± 44 of 4 0.60Down
Eye84 ± 54 of 4 0.86None
Thoracicoabdominal ganglion128 ± 44 of 4 1.30Up
Salivary gland13 ± 50 of 4 0.14Down
Crop55 ± 24 of 4 0.60Down
Midgut17 ± 22 of 4 0.20Down
Tubule25 ± 31 of 4 0.30Down
Hindgut11 ± 21 of 4 0.10Down
Heart853 ± 344 of 4 8.72Up
Fat body567 ± 654 of 4 5.79Up
Ovary12 ± 04 of 4 0.10Down
Testis21 ± 14 of 4 0.20Down
Male accessory glands100 ± 54 of 4 1.00None
Virgin spermatheca14 ± 20 of 4 0.15Down
Mated spermatheca28 ± 63 of 4 0.29Down
Adult carcass567 ± 544 of 4 5.80Up
Larval CNS76 ± 24 of 4 0.78Down
Larval Salivary gland12 ± 30 of 4 0.12Down
Larval midgut10 ± 10 of 4 0.10Down
Larval tubule8 ± 20 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.04Down
Larval fat body18 ± 41 of 4 0.20Down
Larval trachea5 ± 30 of 4 0.06Down
Larval carcass16 ± 12 of 4 0.16Down
S2 cells (growing)28 ± 14 of 4 0.29Down
Whole fly97 ± 64 of 4

Looking for FBgn0035656. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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